Analysis of interatomic Contacts of Structural Units in PDB entry:
6UO8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UO8 entry

There are 2 chains in PDB entry 6UO8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 166THR 862
B
 SER 53ASN 750
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 6UO8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
184 200Right-handed alpha
Helix 2
AA2
A
221 234Right-handed alpha
Helix 3
AA3
A
246 257Right-handed alpha
Helix 4
AA4
A
258 260Right-handed 310
Helix 5
AA5
A
271 276Right-handed 310
Helix 6
AA6
A
289 292Right-handed 310
Helix 7
AA7
A
293 304Right-handed alpha
Helix 8
AA8
A
316 330Right-handed alpha
Helix 9
AA9
A
331 334Right-handed 310
Helix 10
AB1
A
347 358Right-handed alpha
Helix 11
AB2
A
368 379Right-handed alpha
Helix 12
AB3
A
380 382Right-handed 310
Helix 13
AB4
A
412 417Right-handed alpha
Helix 14
AB5
A
444 454Right-handed alpha
Helix 15
AB6
A
466 485Right-handed alpha
Helix 16
AB7
A
505 515Right-handed alpha
Helix 17
AB8
A
568 572Right-handed 310
Helix 18
AB9
A
589 616Right-handed alpha
Helix 19
AC1
A
619 624Right-handed alpha
Helix 20
AC2
A
627 642Right-handed alpha
Helix 21
AC3
A
644 649Right-handed alpha
Helix 22
AC4
A
658 691Right-handed alpha
Helix 23
AC5
A
707 731Right-handed alpha
Helix 24
AC6
A
768 790Right-handed alpha
Helix 25
AC7
A
800 824Right-handed alpha
Helix 26
AC8
A
832 854Right-handed alpha
Helix 27
AC9
A
854 862Right-handed alpha
Helix 28
AD1
B
71 90Right-handed alpha
Helix 29
AD2
B
109 123Right-handed alpha
Helix 30
AD3
B
137 144Right-handed alpha
Helix 31
AD4
B
160 165Right-handed 310
Helix 32
AD5
B
182 191Right-handed alpha
Helix 33
AD6
B
206 219Right-handed alpha
Helix 34
AD7
B
235 238Right-handed 310
Helix 35
AD8
B
239 246Right-handed alpha
Helix 36
AD9
B
256 270Right-handed alpha
Helix 37
AE1
B
304 309Right-handed alpha
Helix 38
AE2
B
334 346Right-handed alpha
Helix 39
AE3
B
358 374Right-handed alpha
Helix 40
AE4
B
378 384Right-handed alpha
Helix 41
AE5
B
392 405Right-handed alpha
Helix 42
AE6
B
478 506Right-handed alpha
Helix 43
AE7
B
516 538Right-handed alpha
Helix 44
AE8
B
548 582Right-handed alpha
Helix 45
AE9
B
595 614Right-handed alpha
Helix 46
AF1
B
657 680Right-handed alpha
Helix 47
AF2
B
690 711Right-handed alpha
Helix 48
AF3
B
719 750Right-handed alpha
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There are 8 sheets in PDB entry 6UO8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 217first strand
Strand 2
A
168 176parallel
Strand 3
A
239 243parallel
Strand 4
A
263 266parallel
Strand 5
A
283 285parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 339first strand
Strand 2
A
308 314parallel
Strand 3
A
342 343parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 339first strand
Strand 2
A
308 314parallel
Strand 3
A
361 365parallel
Strand 4
A
389 393parallel
Strand 5
A
422 427parallel
Strand 6
A
537 543anti-parallel
Strand 7
A
546 553anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
580 583first strand
Strand 2
A
754 760parallel
Strand 3
A
737 740anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 104first strand
Strand 2
B
55 61parallel
Strand 3
B
127 132parallel
Strand 4
B
153 155parallel
Strand 5
B
172 174parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 231first strand
Strand 2
B
198 202parallel
Strand 3
B
250 254parallel
Strand 4
B
278 282parallel
Strand 5
B
315 319parallel
Strand 6
B
425 431anti-parallel
Strand 7
B
436 443anti-parallel
Strand 8
B
449 451anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
416 418first strand
Strand 2
B
421 423anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
470 474first strand
Strand 2
B
640 645parallel
Strand 3
B
626 627anti-parallel
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