Analysis of interatomic Contacts of Structural Units in PDB entry:
6UOJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UOJ entry

There are 2 chains in PDB entry 6UOJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 26	ALA 568
B	ASP 28	ALA 568

There are 38 helices in PDB entry 6UOJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	55	Right-handed 310
Helix 2	AA2	A	72	86	Right-handed alpha
Helix 3	AA3	A	91	104	Right-handed alpha
Helix 4	AA4	A	108	126	Right-handed alpha
Helix 5	AA5	A	154	170	Right-handed alpha
Helix 6	AA6	A	214	220	Right-handed alpha
Helix 7	AA7	A	227	231	Right-handed 310
Helix 8	AA8	A	232	248	Right-handed alpha
Helix 9	AA9	A	265	278	Right-handed alpha
Helix 10	AB1	A	297	311	Right-handed alpha
Helix 11	AB2	A	369	374	Right-handed 310
Helix 12	AB3	A	394	404	Right-handed alpha
Helix 13	AB4	A	421	434	Right-handed alpha
Helix 14	AB5	A	439	443	Right-handed 310
Helix 15	AB6	A	468	474	Right-handed 310
Helix 16	AB7	A	475	482	Right-handed alpha
Helix 17	AB8	A	495	506	Right-handed alpha
Helix 18	AB9	A	516	524	Right-handed alpha
Helix 19	AC1	A	533	540	Right-handed 310
Helix 20	AC2	B	52	55	Right-handed 310
Helix 21	AC3	B	72	86	Right-handed alpha
Helix 22	AC4	B	91	104	Right-handed alpha
Helix 23	AC5	B	108	126	Right-handed alpha
Helix 24	AC6	B	154	170	Right-handed alpha
Helix 25	AC7	B	214	220	Right-handed alpha
Helix 26	AC8	B	227	231	Right-handed 310
Helix 27	AC9	B	232	248	Right-handed alpha
Helix 28	AD1	B	265	278	Right-handed alpha
Helix 29	AD2	B	297	311	Right-handed alpha
Helix 30	AD3	B	369	374	Right-handed 310
Helix 31	AD4	B	394	403	Right-handed alpha
Helix 32	AD5	B	421	434	Right-handed alpha
Helix 33	AD6	B	439	443	Right-handed 310
Helix 34	AD7	B	468	474	Right-handed 310
Helix 35	AD8	B	475	482	Right-handed alpha
Helix 36	AD9	B	495	506	Right-handed alpha
Helix 37	AE1	B	516	524	Right-handed alpha
Helix 38	AE2	B	533	540	Right-handed 310

There are 12 sheets in PDB entry 6UOJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	49	first strand
Strand 2	A	360	364	anti-parallel
Strand 3	A	351	357	anti-parallel
Strand 4	A	206	213	anti-parallel
Strand 5	A	138	146	anti-parallel
Strand 6	A	195	201	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	62	first strand
Strand 2	A	65	70	anti-parallel
Strand 3	A	149	150	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	187	first strand
Strand 2	A	176	179	anti-parallel
Strand 3	B	323	334	anti-parallel
Strand 4	B	255	263	parallel
Strand 5	B	338	345	anti-parallel
Strand 6	B	222	226	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	187	first strand
Strand 2	A	176	179	anti-parallel
Strand 3	B	323	334	anti-parallel
Strand 4	B	295	296	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	226	first strand
Strand 2	A	338	345	anti-parallel
Strand 3	A	255	261	anti-parallel
Strand 4	A	323	330	parallel
Strand 5	A	295	296	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	B	176	179	anti-parallel
Strand 3	B	185	187	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	390	first strand
Strand 2	A	410	419	parallel
Strand 3	A	447	448	parallel
Strand 4	A	487	490	parallel
Strand 5	A	508	512	parallel
Strand 6	A	541	555	anti-parallel
Strand 7	A	525	532	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	390	first strand
Strand 2	A	410	419	parallel
Strand 3	A	541	555	anti-parallel
Strand 4	A	525	532	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	49	first strand
Strand 2	B	360	364	anti-parallel
Strand 3	B	351	357	anti-parallel
Strand 4	B	206	213	anti-parallel
Strand 5	B	138	146	anti-parallel
Strand 6	B	195	201	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	62	first strand
Strand 2	B	65	70	anti-parallel
Strand 3	B	149	150	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	390	first strand
Strand 2	B	410	419	parallel
Strand 3	B	447	448	parallel
Strand 4	B	487	490	parallel
Strand 5	B	508	511	parallel
Strand 6	B	541	555	anti-parallel
Strand 7	B	525	532	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	390	first strand
Strand 2	B	410	419	parallel
Strand 3	B	541	555	anti-parallel
Strand 4	B	525	532	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UOJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UOJ