Analysis of interatomic Contacts of Structural Units in PDB entry:
6UP2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UP2 entry

There is 1 chain in PDB entry 6UP2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 158THR 981
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6UP2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
159 164Right-handed alpha
Helix 2
AA2
A
169 185Right-handed alpha
Helix 3
AA3
A
186 198Right-handed alpha
Helix 4
AA4
A
199 204Right-handed alpha
Helix 5
AA5
A
204 215Right-handed alpha
Helix 6
AA6
A
227 243Right-handed alpha
Helix 7
AA7
A
245 248Right-handed 310
Helix 8
AA8
A
257 272Right-handed alpha
Helix 9
AA9
A
304 314Right-handed alpha
Helix 10
AB1
A
327 331Right-handed 310
Helix 11
AB2
A
332 349Right-handed alpha
Helix 12
AB3
A
363 370Right-handed alpha
Helix 13
AB4
A
389 398Right-handed alpha
Helix 14
AB5
A
421 446Right-handed alpha
Helix 15
AB6
A
447 457Right-handed alpha
Helix 16
AB7
A
463 478Right-handed alpha
Helix 17
AB8
A
489 502Right-handed alpha
Helix 18
AB9
A
503 508Right-handed 310
Helix 19
AC1
A
544 548Right-handed 310
Helix 20
AC2
A
584 594Right-handed alpha
Helix 21
AC3
A
608 614Right-handed alpha
Helix 22
AC4
A
621 626Right-handed alpha
Helix 23
AC5
A
628 638Right-handed alpha
Helix 24
AC6
A
642 649Right-handed alpha
Helix 25
AC7
A
655 669Right-handed alpha
Helix 26
AC8
A
679 687Right-handed alpha
Helix 27
AC9
A
691 704Right-handed alpha
Helix 28
AD1
A
706 719Right-handed alpha
Helix 29
AD2
A
729 742Right-handed alpha
Helix 30
AD3
A
746 764Right-handed alpha
Helix 31
AD4
A
765 777Right-handed alpha
Helix 32
AD5
A
779 800Right-handed alpha
Helix 33
AD6
A
810 814Right-handed 310
Helix 34
AD7
A
819 832Right-handed alpha
Helix 35
AD8
A
898 906Right-handed alpha
Helix 36
AD9
A
931 955Right-handed alpha
Helix 37
AE1
A
967 980Right-handed alpha
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There are 5 sheets in PDB entry 6UP2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
282 286anti-parallel
Strand 3
A
298 303parallel
Strand 4
A
250 255parallel
Strand 5
A
322 325parallel
Strand 6
A
353 358parallel
Strand 7
A
217 222parallel
Strand 8
A
375 378parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 388first strand
Strand 2
A
601 605parallel
Strand 3
A
555 560parallel
Strand 4
A
482 486parallel
Strand 5
A
537 542parallel
Strand 6
A
511 516parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 570first strand
Strand 2
A
575 582anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
883 885first strand
Strand 2
A
889 891anti-parallel
Strand 3
A
857 861parallel
Strand 4
A
850 853anti-parallel
Strand 5
A
835 838anti-parallel
Strand 6
A
877 880anti-parallel
Strand 7
A
894 897anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
909 912first strand
Strand 2
A
919 922anti-parallel
Strand 3
A
926 929anti-parallel
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