Analysis of interatomic Contacts of Structural Units in PDB entry:
6UP4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UP4 entry

There is 1 chain in PDB entry 6UP4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 152THR 981
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6UP4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
153 157Right-handed 310
Helix 2
AA2
A
159 164Right-handed alpha
Helix 3
AA3
A
169 184Right-handed alpha
Helix 4
AA4
A
186 198Right-handed alpha
Helix 5
AA5
A
199 204Right-handed alpha
Helix 6
AA6
A
204 215Right-handed alpha
Helix 7
AA7
A
227 243Right-handed alpha
Helix 8
AA8
A
245 248Right-handed 310
Helix 9
AA9
A
257 272Right-handed alpha
Helix 10
AB1
A
304 314Right-handed alpha
Helix 11
AB2
A
327 331Right-handed 310
Helix 12
AB3
A
332 346Right-handed alpha
Helix 13
AB4
A
362 370Right-handed alpha
Helix 14
AB5
A
389 398Right-handed alpha
Helix 15
AB6
A
412 417Right-handed 310
Helix 16
AB7
A
421 444Right-handed alpha
Helix 17
AB8
A
447 455Right-handed alpha
Helix 18
AB9
A
463 478Right-handed alpha
Helix 19
AC1
A
488 502Right-handed alpha
Helix 20
AC2
A
503 508Right-handed 310
Helix 21
AC3
A
545 548Right-handed 310
Helix 22
AC4
A
584 594Right-handed alpha
Helix 23
AC5
A
608 614Right-handed alpha
Helix 24
AC6
A
621 625Right-handed 310
Helix 25
AC7
A
628 638Right-handed alpha
Helix 26
AC8
A
642 648Right-handed alpha
Helix 27
AC9
A
655 669Right-handed alpha
Helix 28
AD1
A
679 687Right-handed alpha
Helix 29
AD2
A
691 704Right-handed alpha
Helix 30
AD3
A
706 719Right-handed alpha
Helix 31
AD4
A
729 742Right-handed alpha
Helix 32
AD5
A
746 764Right-handed alpha
Helix 33
AD6
A
765 776Right-handed alpha
Helix 34
AD7
A
779 800Right-handed alpha
Helix 35
AD8
A
810 814Right-handed 310
Helix 36
AD9
A
819 832Right-handed alpha
Helix 37
AE1
A
898 906Right-handed alpha
Helix 38
AE2
A
931 952Right-handed alpha
Helix 39
AE3
A
966 980Right-handed alpha
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There are 5 sheets in PDB entry 6UP4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
282 286anti-parallel
Strand 3
A
298 303parallel
Strand 4
A
250 255parallel
Strand 5
A
322 325parallel
Strand 6
A
353 358parallel
Strand 7
A
217 222parallel
Strand 8
A
375 378parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 388first strand
Strand 2
A
601 605parallel
Strand 3
A
555 560parallel
Strand 4
A
482 487parallel
Strand 5
A
537 543parallel
Strand 6
A
511 516parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 570first strand
Strand 2
A
575 582anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
883 885first strand
Strand 2
A
889 891anti-parallel
Strand 3
A
858 861parallel
Strand 4
A
850 853anti-parallel
Strand 5
A
835 838anti-parallel
Strand 6
A
877 880anti-parallel
Strand 7
A
894 897anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
909 913first strand
Strand 2
A
918 922anti-parallel
Strand 3
A
926 929anti-parallel
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