Analysis of interatomic Contacts of Structural Units in PDB entry:
6UP7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UP7 entry

There are 4 chains in PDB entry 6UP7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ARG 8	LEU 13
B	VAL 8	LYS 355
R	PRO 50	CYS 383
V	UNK 405	UNK 413

There are 13 helices in PDB entry 6UP7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	67	71	Right-handed 310
Helix 2	AA2	B	98	107	Right-handed alpha
Helix 3	AA3	R	51	55	Right-handed 310
Helix 4	AA4	R	59	93	Right-handed alpha
Helix 5	AA5	R	101	129	Right-handed alpha
Helix 6	AA6	R	137	172	Right-handed alpha
Helix 7	AA7	R	174	180	Right-handed alpha
Helix 8	AA8	R	181	200	Right-handed alpha
Helix 9	AA9	R	200	205	Right-handed alpha
Helix 10	AB1	R	229	270	Right-handed alpha
Helix 11	AB2	R	295	328	Right-handed alpha
Helix 12	AB3	R	335	365	Right-handed alpha
Helix 13	AB4	R	369	383	Right-handed alpha

There are 9 sheets in PDB entry 6UP7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	19	20	anti-parallel
Strand 3	B	41	42	anti-parallel
Strand 4	B	112	113	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	B	169	170	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	37	first strand
Strand 2	B	117	118	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	85	first strand
Strand 2	B	52	60	anti-parallel
Strand 3	B	143	151	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	185	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	217	221	anti-parallel
Strand 4	B	267	268	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	215	first strand
Strand 2	B	273	274	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	252	first strand
Strand 2	B	230	241	anti-parallel
Strand 3	B	256	257	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	252	first strand
Strand 2	B	230	241	anti-parallel
Strand 3	B	317	328	anti-parallel
Strand 4	B	343	349	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	210	211	first strand
Strand 2	R	222	223	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UP7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UP7