Analysis of interatomic Contacts of Structural Units in PDB entry:
6UPA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UPA entry

There are 2 chains in PDB entry 6UPA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PHE 41GLU 305
A
 GLU 37ARG 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6UPA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
54 64Right-handed alpha
Helix 2
AA2
B
114 134Right-handed alpha
Helix 3
AA3
B
139 143Right-handed 310
Helix 4
AA4
B
163 173Right-handed alpha
Helix 5
AA5
B
185 189Right-handed 310
Helix 6
AA6
B
190 208Right-handed alpha
Helix 7
AA7
B
219 221Right-handed 310
Helix 8
AA8
B
222 232Right-handed alpha
Helix 9
AA9
B
270 276Right-handed alpha
Helix 10
AB1
B
279 293Right-handed alpha
Helix 11
AB2
B
293 305Right-handed alpha
Helix 12
AB3
A
49 59Right-handed alpha
Helix 13
AB4
A
115 134Right-handed alpha
Helix 14
AB5
A
161 172Right-handed alpha
Helix 15
AB6
A
183 187Right-handed 310
Helix 16
AB7
A
188 206Right-handed alpha
Helix 17
AB8
A
225 234Right-handed alpha
Helix 18
AB9
A
272 283Right-handed alpha
Helix 19
AC1
A
283 294Right-handed alpha
Helix 20
AC2
A
294 304Right-handed alpha
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There are 4 sheets in PDB entry 6UPA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 87first strand
Strand 2
B
96 103anti-parallel
Strand 3
B
42 48parallel
Strand 4
B
150 155parallel
Strand 5
B
179 183parallel
Strand 6
B
235 236parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 246first strand
Strand 2
B
249 256anti-parallel
Strand 3
B
259 262anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 86first strand
Strand 2
A
97 101anti-parallel
Strand 3
A
38 44parallel
Strand 4
A
148 153parallel
Strand 5
A
177 181parallel
Strand 6
A
237 238parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
A
253 258anti-parallel
Strand 3
A
261 264anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il