Analysis of interatomic Contacts of Structural Units in PDB entry:
6UPB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UPB entry

There are 2 chains in PDB entry 6UPB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 246
B
 MET 1PRO 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6UPB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 35Right-handed 310
Helix 2
AA2
A
38 51Right-handed alpha
Helix 3
AA3
A
63 72Right-handed alpha
Helix 4
AA4
A
81 83Right-handed 310
Helix 5
AA5
A
99 116Right-handed alpha
Helix 6
AA6
A
136 138Right-handed 310
Helix 7
AA7
A
139 154Right-handed alpha
Helix 8
AA8
A
174 184Right-handed alpha
Helix 9
AA9
A
199 212Right-handed alpha
Helix 10
AB1
A
232 245Right-handed alpha
Helix 11
AB2
B
38 51Right-handed alpha
Helix 12
AB3
B
63 72Right-handed alpha
Helix 13
AB4
B
81 83Right-handed 310
Helix 14
AB5
B
99 116Right-handed alpha
Helix 15
AB6
B
136 138Right-handed 310
Helix 16
AB7
B
139 154Right-handed alpha
Helix 17
AB8
B
174 184Right-handed alpha
Helix 18
AB9
B
199 212Right-handed alpha
Helix 19
AC1
B
232 245Right-handed alpha
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There are 4 sheets in PDB entry 6UPB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
228 230parallel
Strand 3
A
215 219parallel
Strand 4
A
192 197parallel
Strand 5
A
15 19parallel
Strand 6
A
56 59parallel
Strand 7
A
78 80parallel
Strand 8
A
85 87anti-parallel
Strand 9
A
93 95anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 124first strand
Strand 2
A
129 132anti-parallel
Strand 3
A
165 170anti-parallel
Strand 4
A
157 162anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
228 230parallel
Strand 3
B
215 219parallel
Strand 4
B
192 197parallel
Strand 5
B
15 19parallel
Strand 6
B
56 59parallel
Strand 7
B
78 80parallel
Strand 8
B
85 87anti-parallel
Strand 9
B
93 95anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 124first strand
Strand 2
B
129 132anti-parallel
Strand 3
B
165 170anti-parallel
Strand 4
B
157 162anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il