Analysis of interatomic Contacts of Structural Units in PDB entry:
6UPL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UPL entry

There are 12 chains in PDB entry 6UPL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 38	ARG 134
B	ASN 25	GLY 102
C	ARG 11	LYS 118
D	LYS 30	LYS 125
E	LYS 37	ALA 135
F	ARG 19	GLY 102
K	LYS 15	LYS 118
L	GLU 35	SER 124
G	SER 511	UNK 960
H	MET 1	ASN 427
I	T -39	A 39
J	T -39	A 39

There are 43 helices in PDB entry 6UPL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	55	Right-handed alpha
Helix 2	AA2	A	63	76	Right-handed alpha
Helix 3	AA3	A	85	114	Right-handed alpha
Helix 4	AA4	A	120	132	Right-handed alpha
Helix 5	AA5	B	25	29	Right-handed 310
Helix 6	AA6	B	30	40	Right-handed alpha
Helix 7	AA7	B	47	76	Right-handed alpha
Helix 8	AA8	B	83	93	Right-handed alpha
Helix 9	AA9	C	26	38	Right-handed alpha
Helix 10	AB1	C	45	74	Right-handed alpha
Helix 11	AB2	C	79	89	Right-handed alpha
Helix 12	AB3	C	91	97	Right-handed alpha
Helix 13	AB4	D	38	49	Right-handed alpha
Helix 14	AB5	D	55	84	Right-handed alpha
Helix 15	AB6	D	90	102	Right-handed alpha
Helix 16	AB7	D	104	122	Right-handed alpha
Helix 17	AB8	E	44	57	Right-handed alpha
Helix 18	AB9	E	63	79	Right-handed alpha
Helix 19	AC1	E	85	115	Right-handed alpha
Helix 20	AC2	E	120	132	Right-handed alpha
Helix 21	AC3	F	30	41	Right-handed alpha
Helix 22	AC4	F	49	76	Right-handed alpha
Helix 23	AC5	F	82	94	Right-handed alpha
Helix 24	AC6	K	16	21	Right-handed alpha
Helix 25	AC7	K	26	36	Right-handed alpha
Helix 26	AC8	K	45	73	Right-handed alpha
Helix 27	AC9	K	79	90	Right-handed alpha
Helix 28	AD1	K	90	97	Right-handed alpha
Helix 29	AD2	L	37	49	Right-handed alpha
Helix 30	AD3	L	55	84	Right-handed alpha
Helix 31	AD4	L	90	102	Right-handed alpha
Helix 32	AD5	L	104	123	Right-handed alpha
Helix 33	AD6	G	617	636	Right-handed alpha
Helix 34	AD7	G	763	788	Right-handed alpha
Helix 35	AD8	G	801	805	Right-handed 310
Helix 36	AD9	G	878	888	Right-handed alpha
Helix 37	AE1	G	901	910	Right-handed alpha
Helix 38	AE2	G	912	919	Right-handed alpha
Helix 39	AE3	G	920	926	Right-handed 310
Helix 40	AE4	H	80	90	Right-handed alpha
Helix 41	AE5	H	290	298	Right-handed alpha
Helix 42	AE6	H	311	323	Right-handed alpha
Helix 43	AE7	H	410	421	Right-handed alpha

There are 19 sheets in PDB entry 6UPL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	K	101	102	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	F	96	98	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	530	532	first strand
Strand 2	G	537	541	anti-parallel
Strand 3	G	546	550	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	554	560	first strand
Strand 2	G	566	572	anti-parallel
Strand 3	G	594	602	anti-parallel
Strand 4	H	162	166	anti-parallel
Strand 5	H	147	149	anti-parallel
Strand 6	H	138	140	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	696	700	first strand
Strand 2	G	686	691	anti-parallel
Strand 3	G	677	682	anti-parallel
Strand 4	G	661	668	anti-parallel
Strand 5	G	733	741	anti-parallel
Strand 6	G	721	730	anti-parallel
Strand 7	G	704	708	anti-parallel
Strand 8	G	797	798	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	818	819	first strand
Strand 2	G	824	825	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	840	845	first strand
Strand 2	G	857	861	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	71	75	anti-parallel
Strand 3	H	61	66	anti-parallel
Strand 4	H	48	54	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	25	first strand
Strand 2	H	30	33	anti-parallel
Strand 3	H	40	43	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	111	114	first strand
Strand 2	H	119	123	anti-parallel
Strand 3	H	126	127	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	201	207	first strand
Strand 2	H	212	218	anti-parallel
Strand 3	H	222	226	anti-parallel
Strand 4	H	233	235	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	242	243	first strand
Strand 2	H	326	327	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	252	264	first strand
Strand 2	H	269	278	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	285	286	first strand
Strand 2	H	305	306	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	342	344	first strand
Strand 2	H	349	351	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	353	355	first strand
Strand 2	H	358	360	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	400	406	first strand
Strand 2	H	389	395	anti-parallel
Strand 3	H	374	380	anti-parallel
Strand 4	H	424	426	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UPL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UPL