Analysis of interatomic Contacts of Structural Units in PDB entry:
6UPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UPR entry

There are 2 chains in PDB entry 6UPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 36ARG 306
B
 GLY 42GLN 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6UPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 59Right-handed alpha
Helix 2
AA2
A
72 77Right-handed 310
Helix 3
AA3
A
115 135Right-handed alpha
Helix 4
AA4
A
161 172Right-handed alpha
Helix 5
AA5
A
183 187Right-handed 310
Helix 6
AA6
A
188 206Right-handed alpha
Helix 7
AA7
A
221 234Right-handed alpha
Helix 8
AA8
A
272 283Right-handed alpha
Helix 9
AA9
A
283 294Right-handed alpha
Helix 10
AB1
A
294 305Right-handed alpha
Helix 11
AB2
B
56 65Right-handed alpha
Helix 12
AB3
B
117 136Right-handed alpha
Helix 13
AB4
B
165 176Right-handed alpha
Helix 14
AB5
B
187 191Right-handed 310
Helix 15
AB6
B
192 211Right-handed alpha
Helix 16
AB7
B
221 223Right-handed 310
Helix 17
AB8
B
224 234Right-handed alpha
Helix 18
AB9
B
272 278Right-handed alpha
Helix 19
AC1
B
281 295Right-handed alpha
Helix 20
AC2
B
295 309Right-handed alpha
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There are 4 sheets in PDB entry 6UPR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 88first strand
Strand 2
A
95 101anti-parallel
Strand 3
A
37 44parallel
Strand 4
A
146 153parallel
Strand 5
A
177 181parallel
Strand 6
A
237 238parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 248first strand
Strand 2
A
251 257anti-parallel
Strand 3
A
262 264anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 91first strand
Strand 2
B
96 105anti-parallel
Strand 3
B
43 50parallel
Strand 4
B
152 157parallel
Strand 5
B
181 185parallel
Strand 6
B
237 238parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 248first strand
Strand 2
B
251 258anti-parallel
Strand 3
B
261 264anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il