Analysis of interatomic Contacts of Structural Units in PDB entry:
6UQD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UQD entry

There are 2 chains in PDB entry 6UQD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 146PRO 398
B
 GLN 146LEU 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6UQD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
153 157Right-handed 310
Helix 2
AA2
A
191 205Right-handed alpha
Helix 3
AA3
A
234 238Right-handed 310
Helix 4
AA4
A
254 272Right-handed alpha
Helix 5
AA5
A
284 295Right-handed alpha
Helix 6
AA6
A
308 310Right-handed 310
Helix 7
AA7
A
311 325Right-handed alpha
Helix 8
AA8
B
151 156Right-handed alpha
Helix 9
AA9
B
191 205Right-handed alpha
Helix 10
AB1
B
234 238Right-handed 310
Helix 11
AB2
B
254 272Right-handed alpha
Helix 12
AB3
B
284 295Right-handed alpha
Helix 13
AB4
B
308 310Right-handed 310
Helix 14
AB5
B
311 325Right-handed alpha
Helix 15
AB6
B
374 381Right-handed 310
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There are 6 sheets in PDB entry 6UQD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
338 348anti-parallel
Strand 3
A
329 335anti-parallel
Strand 4
A
388 394anti-parallel
Strand 5
A
303 306anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
338 348anti-parallel
Strand 3
A
353 356anti-parallel
Strand 4
A
365 367anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 217first strand
Strand 2
A
230 233anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
338 348anti-parallel
Strand 3
B
329 335anti-parallel
Strand 4
B
388 394anti-parallel
Strand 5
B
303 306anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
338 348anti-parallel
Strand 3
B
353 356anti-parallel
Strand 4
B
365 367anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 217first strand
Strand 2
B
230 233anti-parallel
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