Analysis of interatomic Contacts of Structural Units in PDB entry:
6UQF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UQF entry

There are 4 chains in PDB entry 6UQF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 94	ALA 635
B	MET 94	ALA 635
C	MET 94	ALA 635
D	MET 94	ALA 635

There are112 helices in PDB entry 6UQF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	94	103	Right-handed alpha
Helix 2	AA2	A	107	115	Right-handed alpha
Helix 3	AA3	A	116	129	Right-handed alpha
Helix 4	AA4	A	139	167	Right-handed alpha
Helix 5	AA5	A	172	193	Right-handed alpha
Helix 6	AA6	A	211	221	Right-handed alpha
Helix 7	AA7	A	221	230	Right-handed alpha
Helix 8	AA8	A	232	240	Right-handed alpha
Helix 9	AA9	A	253	258	Right-handed alpha
Helix 10	AB1	A	259	263	Right-handed 310
Helix 11	AB2	A	264	271	Right-handed alpha
Helix 12	AB3	A	272	289	Right-handed alpha
Helix 13	AB4	A	290	322	Right-handed alpha
Helix 14	AB5	A	329	335	Right-handed alpha
Helix 15	AB6	A	340	357	Right-handed alpha
Helix 16	AB7	A	368	401	Right-handed alpha
Helix 17	AB8	A	401	421	Right-handed alpha
Helix 18	AB9	A	424	440	Right-handed alpha
Helix 19	AC1	A	445	453	Right-handed alpha
Helix 20	AC2	A	454	466	Right-handed alpha
Helix 21	AC3	A	466	473	Right-handed alpha
Helix 22	AC4	A	473	479	Right-handed alpha
Helix 23	AC5	A	480	491	Right-handed alpha
Helix 24	AC6	A	540	546	Right-handed alpha
Helix 25	AC7	A	566	576	Right-handed alpha
Helix 26	AC8	A	576	595	Right-handed alpha
Helix 27	AC9	A	598	611	Right-handed alpha
Helix 28	AD1	A	615	635	Right-handed alpha
Helix 29	AD2	B	95	103	Right-handed alpha
Helix 30	AD3	B	107	115	Right-handed alpha
Helix 31	AD4	B	116	129	Right-handed alpha
Helix 32	AD5	B	139	167	Right-handed alpha
Helix 33	AD6	B	172	193	Right-handed alpha
Helix 34	AD7	B	211	221	Right-handed alpha
Helix 35	AD8	B	221	230	Right-handed alpha
Helix 36	AD9	B	232	240	Right-handed alpha
Helix 37	AE1	B	253	258	Right-handed alpha
Helix 38	AE2	B	259	263	Right-handed 310
Helix 39	AE3	B	264	271	Right-handed alpha
Helix 40	AE4	B	272	289	Right-handed alpha
Helix 41	AE5	B	290	322	Right-handed alpha
Helix 42	AE6	B	329	335	Right-handed alpha
Helix 43	AE7	B	340	357	Right-handed alpha
Helix 44	AE8	B	368	401	Right-handed alpha
Helix 45	AE9	B	401	421	Right-handed alpha
Helix 46	AF1	B	424	440	Right-handed alpha
Helix 47	AF2	B	445	453	Right-handed alpha
Helix 48	AF3	B	454	466	Right-handed alpha
Helix 49	AF4	B	466	473	Right-handed alpha
Helix 50	AF5	B	473	479	Right-handed alpha
Helix 51	AF6	B	480	491	Right-handed alpha
Helix 52	AF7	B	540	546	Right-handed alpha
Helix 53	AF8	B	566	576	Right-handed alpha
Helix 54	AF9	B	576	595	Right-handed alpha
Helix 55	AG1	B	598	611	Right-handed alpha
Helix 56	AG2	B	615	635	Right-handed alpha
Helix 57	AG3	C	95	103	Right-handed alpha
Helix 58	AG4	C	107	115	Right-handed alpha
Helix 59	AG5	C	116	129	Right-handed alpha
Helix 60	AG6	C	139	167	Right-handed alpha
Helix 61	AG7	C	172	193	Right-handed alpha
Helix 62	AG8	C	211	221	Right-handed alpha
Helix 63	AG9	C	221	230	Right-handed alpha
Helix 64	AH1	C	232	240	Right-handed alpha
Helix 65	AH2	C	253	258	Right-handed alpha
Helix 66	AH3	C	259	263	Right-handed 310
Helix 67	AH4	C	264	271	Right-handed alpha
Helix 68	AH5	C	272	289	Right-handed alpha
Helix 69	AH6	C	290	322	Right-handed alpha
Helix 70	AH7	C	329	335	Right-handed alpha
Helix 71	AH8	C	340	357	Right-handed alpha
Helix 72	AH9	C	368	401	Right-handed alpha
Helix 73	AI1	C	401	421	Right-handed alpha
Helix 74	AI2	C	424	440	Right-handed alpha
Helix 75	AI3	C	445	453	Right-handed alpha
Helix 76	AI4	C	454	466	Right-handed alpha
Helix 77	AI5	C	466	473	Right-handed alpha
Helix 78	AI6	C	473	479	Right-handed alpha
Helix 79	AI7	C	480	491	Right-handed alpha
Helix 80	AI8	C	540	546	Right-handed alpha
Helix 81	AI9	C	566	576	Right-handed alpha
Helix 82	AJ1	C	576	595	Right-handed alpha
Helix 83	AJ2	C	598	611	Right-handed alpha
Helix 84	AJ3	C	615	635	Right-handed alpha
Helix 85	AJ4	D	95	103	Right-handed alpha
Helix 86	AJ5	D	107	115	Right-handed alpha
Helix 87	AJ6	D	116	129	Right-handed alpha
Helix 88	AJ7	D	139	167	Right-handed alpha
Helix 89	AJ8	D	172	193	Right-handed alpha
Helix 90	AJ9	D	211	221	Right-handed alpha
Helix 91	AK1	D	221	230	Right-handed alpha
Helix 92	AK2	D	232	240	Right-handed alpha
Helix 93	AK3	D	253	258	Right-handed alpha
Helix 94	AK4	D	259	263	Right-handed 310
Helix 95	AK5	D	264	271	Right-handed alpha
Helix 96	AK6	D	272	289	Right-handed alpha
Helix 97	AK7	D	290	322	Right-handed alpha
Helix 98	AK8	D	329	335	Right-handed alpha
Helix 99	AK9	D	340	357	Right-handed alpha
Helix 100	AL1	D	368	401	Right-handed alpha
Helix 101	AL2	D	401	421	Right-handed alpha
Helix 102	AL3	D	424	440	Right-handed alpha
Helix 103	AL4	D	445	453	Right-handed alpha
Helix 104	AL5	D	454	466	Right-handed alpha
Helix 105	AL6	D	466	473	Right-handed alpha
Helix 106	AL7	D	473	479	Right-handed alpha
Helix 107	AL8	D	480	491	Right-handed alpha
Helix 108	AL9	D	540	546	Right-handed alpha
Helix 109	AM1	D	566	576	Right-handed alpha
Helix 110	AM2	D	576	595	Right-handed alpha
Helix 111	AM3	D	598	611	Right-handed alpha
Helix 112	AM4	D	615	635	Right-handed alpha

There are 12 sheets in PDB entry 6UQF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	200	first strand
Strand 2	A	204	206	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	496	first strand
Strand 2	A	559	565	anti-parallel
Strand 3	A	511	517	anti-parallel
Strand 4	A	537	538	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	501	503	first strand
Strand 2	A	552	555	anti-parallel
Strand 3	A	520	523	anti-parallel
Strand 4	A	530	532	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	200	first strand
Strand 2	B	204	206	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	492	496	first strand
Strand 2	B	559	565	anti-parallel
Strand 3	B	511	517	anti-parallel
Strand 4	B	537	538	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	501	503	first strand
Strand 2	B	552	555	anti-parallel
Strand 3	B	520	523	anti-parallel
Strand 4	B	530	532	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	200	first strand
Strand 2	C	204	206	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	492	496	first strand
Strand 2	C	559	565	anti-parallel
Strand 3	C	511	517	anti-parallel
Strand 4	C	537	538	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	501	503	first strand
Strand 2	C	552	555	anti-parallel
Strand 3	C	520	523	anti-parallel
Strand 4	C	530	532	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	200	first strand
Strand 2	D	204	206	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	492	496	first strand
Strand 2	D	559	565	anti-parallel
Strand 3	D	511	517	anti-parallel
Strand 4	D	537	538	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	501	503	first strand
Strand 2	D	552	555	anti-parallel
Strand 3	D	520	523	anti-parallel
Strand 4	D	530	532	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UQF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UQF