Analysis of interatomic Contacts of Structural Units in PDB entry:
6UQJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UQJ entry

There is 1 chain in PDB entry 6UQJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -5VAL 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6UQJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 17Right-handed 310
Helix 2
AA2
A
23 26Right-handed 310
Helix 3
AA3
A
33 38Right-handed alpha
Helix 4
AA4
A
39 54Right-handed alpha
Helix 5
AA5
A
65 69Right-handed 310
Helix 6
AA6
A
82 95Right-handed alpha
Helix 7
AA7
A
107 111Right-handed 310
Helix 8
AA8
A
128 148Right-handed alpha
Helix 9
AA9
A
148 153Right-handed alpha
Helix 10
AB1
A
169 172Right-handed 310
Helix 11
AB2
A
173 192Right-handed alpha
Helix 12
AB3
A
203 206Right-handed 310
Helix 13
AB4
A
207 218Right-handed alpha
Helix 14
AB5
A
254 267Right-handed alpha
Helix 15
AB6
A
288 294Right-handed 310
Helix 16
AB7
A
295 308Right-handed alpha
Helix 17
AB8
A
347 358Right-handed alpha
Helix 18
AB9
A
395 401Right-handed alpha
Helix 19
AC1
A
437 445Right-handed alpha
Helix 20
AC2
A
452 462Right-handed alpha
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There are 6 sheets in PDB entry 6UQJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 13first strand
Strand 2
A
412 417parallel
Strand 3
A
481 485anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
57 59parallel
Strand 3
A
98 103parallel
Strand 4
A
156 159parallel
Strand 5
A
197 202parallel
Strand 6
A
224 230parallel
Strand 7
A
275 281parallel
Strand 8
A
313 316parallel
Strand 9
A
28 30parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 74first strand
Strand 2
A
77 80anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
122 123anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 237first strand
Strand 2
A
243 247anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 363first strand
Strand 2
A
371 376anti-parallel
Strand 3
A
379 385anti-parallel
Strand 4
A
492 499anti-parallel
Strand 5
A
422 431anti-parallel
Strand 6
A
469 475anti-parallel
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