Analysis of interatomic Contacts of Structural Units in PDB entry:
6UQQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UQQ entry

There are 4 chains in PDB entry 6UQQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 49	ALA 316
B	PHE 49	ALA 316
C	GLY 59	VAL 338
D	GLY 59	LEU 329

There are 40 helices in PDB entry 6UQQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	71	Right-handed alpha
Helix 2	AA2	A	82	86	Right-handed 310
Helix 3	AA3	A	127	146	Right-handed alpha
Helix 4	AA4	A	173	184	Right-handed alpha
Helix 5	AA5	A	195	199	Right-handed 310
Helix 6	AA6	A	200	218	Right-handed alpha
Helix 7	AA7	A	232	242	Right-handed alpha
Helix 8	AA8	A	281	290	Right-handed alpha
Helix 9	AA9	A	293	304	Right-handed alpha
Helix 10	AB1	A	304	314	Right-handed alpha
Helix 11	AB2	B	62	72	Right-handed alpha
Helix 12	AB3	B	127	145	Right-handed alpha
Helix 13	AB4	B	173	184	Right-handed alpha
Helix 14	AB5	B	195	199	Right-handed 310
Helix 15	AB6	B	200	218	Right-handed alpha
Helix 16	AB7	B	235	243	Right-handed alpha
Helix 17	AB8	B	281	288	Right-handed alpha
Helix 18	AB9	B	292	304	Right-handed alpha
Helix 19	AC1	B	304	316	Right-handed alpha
Helix 20	AC2	C	73	82	Right-handed alpha
Helix 21	AC3	C	91	95	Right-handed 310
Helix 22	AC4	C	139	157	Right-handed alpha
Helix 23	AC5	C	186	197	Right-handed alpha
Helix 24	AC6	C	208	212	Right-handed 310
Helix 25	AC7	C	213	231	Right-handed alpha
Helix 26	AC8	C	238	242	Right-handed 310
Helix 27	AC9	C	244	257	Right-handed alpha
Helix 28	AD1	C	296	305	Right-handed alpha
Helix 29	AD2	C	308	319	Right-handed alpha
Helix 30	AD3	C	319	330	Right-handed alpha
Helix 31	AD4	D	73	82	Right-handed alpha
Helix 32	AD5	D	139	157	Right-handed alpha
Helix 33	AD6	D	186	197	Right-handed alpha
Helix 34	AD7	D	208	212	Right-handed 310
Helix 35	AD8	D	213	231	Right-handed alpha
Helix 36	AD9	D	238	242	Right-handed 310
Helix 37	AE1	D	244	257	Right-handed alpha
Helix 38	AE2	D	296	305	Right-handed alpha
Helix 39	AE3	D	308	319	Right-handed alpha
Helix 40	AE4	D	319	328	Right-handed alpha

There are 8 sheets in PDB entry 6UQQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	102	first strand
Strand 2	A	105	113	anti-parallel
Strand 3	A	50	56	parallel
Strand 4	A	160	165	parallel
Strand 5	A	189	193	parallel
Strand 6	A	246	247	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	257	first strand
Strand 2	A	260	266	anti-parallel
Strand 3	A	271	273	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	100	first strand
Strand 2	B	107	113	anti-parallel
Strand 3	B	50	56	parallel
Strand 4	B	160	165	parallel
Strand 5	B	189	193	parallel
Strand 6	B	246	247	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	255	first strand
Strand 2	B	262	267	anti-parallel
Strand 3	B	270	273	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	112	first strand
Strand 2	C	119	125	anti-parallel
Strand 3	C	60	67	parallel
Strand 4	C	173	178	parallel
Strand 5	C	202	206	parallel
Strand 6	C	261	262	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	272	first strand
Strand 2	C	275	282	anti-parallel
Strand 3	C	285	288	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	112	first strand
Strand 2	D	119	125	anti-parallel
Strand 3	D	60	67	parallel
Strand 4	D	173	178	parallel
Strand 5	D	202	206	parallel
Strand 6	D	261	262	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	269	271	first strand
Strand 2	D	276	282	anti-parallel
Strand 3	D	285	288	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UQQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UQQ