Analysis of interatomic Contacts of Structural Units in PDB entry:
6UQR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UQR entry

There are 4 chains in PDB entry 6UQR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	VAL 247
B	ARG 334	PRO 545
C	GLN 1	VAL 247
D	ARG 334	PRO 545

There are 10 helices in PDB entry 6UQR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	87	91	Right-handed 310
Helix 2	AA2	B	344	350	Right-handed alpha
Helix 3	AA3	B	406	413	Right-handed alpha
Helix 4	AA4	B	486	490	Right-handed 310
Helix 5	AA5	B	512	519	Right-handed alpha
Helix 6	AA6	C	87	91	Right-handed 310
Helix 7	AA7	D	344	350	Right-handed alpha
Helix 8	AA8	D	406	413	Right-handed alpha
Helix 9	AA9	D	486	488	Right-handed 310
Helix 10	AB1	D	512	519	Right-handed alpha

There are 20 sheets in PDB entry 6UQR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	116	118	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	43	51	anti-parallel
Strand 3	A	33	40	anti-parallel
Strand 4	A	93	99	anti-parallel
Strand 5	A	109	110	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	150	first strand
Strand 2	A	162	168	anti-parallel
Strand 3	A	213	218	anti-parallel
Strand 4	A	205	210	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	197	first strand
Strand 2	A	187	192	anti-parallel
Strand 3	A	176	181	anti-parallel
Strand 4	A	228	233	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	341	first strand
Strand 2	B	355	363	anti-parallel
Strand 3	B	397	404	anti-parallel
Strand 4	B	386	391	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	376	first strand
Strand 2	B	416	421	anti-parallel
Strand 3	B	429	433	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	449	first strand
Strand 2	B	460	469	anti-parallel
Strand 3	B	503	511	anti-parallel
Strand 4	B	491	492	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	449	first strand
Strand 2	B	460	469	anti-parallel
Strand 3	B	503	511	anti-parallel
Strand 4	B	496	497	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	480	first strand
Strand 2	B	521	527	anti-parallel
Strand 3	B	536	542	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	46	51	anti-parallel
Strand 3	C	33	39	anti-parallel
Strand 4	C	92	99	anti-parallel
Strand 5	C	115	116	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	150	first strand
Strand 2	C	162	168	anti-parallel
Strand 3	C	213	218	anti-parallel
Strand 4	C	205	210	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	197	first strand
Strand 2	C	187	192	anti-parallel
Strand 3	C	176	181	anti-parallel
Strand 4	C	228	233	anti-parallel
Strand 5	C	240	241	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	197	first strand
Strand 2	C	187	192	anti-parallel
Strand 3	C	176	181	anti-parallel
Strand 4	C	228	233	anti-parallel
Strand 5	C	245	246	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	340	first strand
Strand 2	D	355	363	anti-parallel
Strand 3	D	397	404	anti-parallel
Strand 4	D	386	391	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	371	376	first strand
Strand 2	D	416	421	anti-parallel
Strand 3	D	429	433	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	444	449	first strand
Strand 2	D	460	469	anti-parallel
Strand 3	D	503	511	anti-parallel
Strand 4	D	490	492	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	444	449	first strand
Strand 2	D	460	469	anti-parallel
Strand 3	D	503	511	anti-parallel
Strand 4	D	496	497	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	475	480	first strand
Strand 2	D	521	527	anti-parallel
Strand 3	D	536	542	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UQR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UQR