Analysis of interatomic Contacts of Structural Units in PDB entry:
6UQX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UQX entry

There are 2 chains in PDB entry 6UQX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 23ARG 307
B
 SER 23ARG 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6UQX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 56Right-handed alpha
Helix 2
AA2
A
78 88Right-handed alpha
Helix 3
AA3
A
107 113Right-handed 310
Helix 4
AA4
A
117 128Right-handed alpha
Helix 5
AA5
A
145 155Right-handed alpha
Helix 6
AA6
A
160 183Right-handed alpha
Helix 7
AA7
A
194 197Right-handed 310
Helix 8
AA8
A
198 204Right-handed alpha
Helix 9
AA9
A
206 232Right-handed alpha
Helix 10
AB1
A
240 251Right-handed alpha
Helix 11
AB2
A
252 256Right-handed 310
Helix 12
AB3
A
277 279Right-handed 310
Helix 13
AB4
A
290 303Right-handed alpha
Helix 14
AB5
B
43 56Right-handed alpha
Helix 15
AB6
B
78 88Right-handed alpha
Helix 16
AB7
B
107 111Right-handed 310
Helix 17
AB8
B
117 130Right-handed alpha
Helix 18
AB9
B
145 155Right-handed alpha
Helix 19
AC1
B
160 183Right-handed alpha
Helix 20
AC2
B
194 197Right-handed 310
Helix 21
AC3
B
198 204Right-handed alpha
Helix 22
AC4
B
206 232Right-handed alpha
Helix 23
AC5
B
240 251Right-handed alpha
Helix 24
AC6
B
252 256Right-handed 310
Helix 25
AC7
B
277 279Right-handed 310
Helix 26
AC8
B
290 303Right-handed alpha
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There are 4 sheets in PDB entry 6UQX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
31 36parallel
Strand 3
A
139 143parallel
Strand 4
A
186 190parallel
Strand 5
A
235 239parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 263first strand
Strand 2
A
281 283parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 93first strand
Strand 2
B
31 36parallel
Strand 3
B
139 143parallel
Strand 4
B
186 190parallel
Strand 5
B
235 239parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 263first strand
Strand 2
B
281 283parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il