Analysis of interatomic Contacts of Structural Units in PDB entry:
6UR8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UR8 entry

There are 5 chains in PDB entry 6UR8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 5	TRP 596
B	ASP 2	PHE 365
C	ASP 2	PHE 365
D	GLU 5	TRP 596
E	ASP 2	PHE 365

There are 42 helices in PDB entry 6UR8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	19	Right-handed alpha
Helix 2	AA2	A	76	80	Right-handed 310
Helix 3	AA3	A	217	224	Right-handed alpha
Helix 4	AA4	A	224	231	Right-handed alpha
Helix 5	AA5	A	236	241	Right-handed 310
Helix 6	AA6	A	247	267	Right-handed alpha
Helix 7	AA7	A	279	306	Right-handed alpha
Helix 8	AA8	A	317	329	Right-handed alpha
Helix 9	AA9	A	564	593	Right-handed alpha
Helix 10	AB1	B	3	12	Right-handed alpha
Helix 11	AB2	B	209	225	Right-handed alpha
Helix 12	AB3	B	229	233	Right-handed 310
Helix 13	AB4	B	239	262	Right-handed alpha
Helix 14	AB5	B	270	298	Right-handed alpha
Helix 15	AB6	B	308	318	Right-handed alpha
Helix 16	AB7	B	319	322	Right-handed 310
Helix 17	AB8	B	334	365	Right-handed alpha
Helix 18	AB9	C	3	12	Right-handed alpha
Helix 19	AC1	C	209	225	Right-handed alpha
Helix 20	AC2	C	229	233	Right-handed 310
Helix 21	AC3	C	239	262	Right-handed alpha
Helix 22	AC4	C	270	298	Right-handed alpha
Helix 23	AC5	C	308	318	Right-handed alpha
Helix 24	AC6	C	319	322	Right-handed 310
Helix 25	AC7	C	334	365	Right-handed alpha
Helix 26	AC8	D	6	19	Right-handed alpha
Helix 27	AC9	D	76	80	Right-handed 310
Helix 28	AD1	D	217	224	Right-handed alpha
Helix 29	AD2	D	224	231	Right-handed alpha
Helix 30	AD3	D	236	241	Right-handed 310
Helix 31	AD4	D	247	267	Right-handed alpha
Helix 32	AD5	D	279	306	Right-handed alpha
Helix 33	AD6	D	317	329	Right-handed alpha
Helix 34	AD7	D	565	593	Right-handed alpha
Helix 35	AD8	E	3	12	Right-handed alpha
Helix 36	AD9	E	209	225	Right-handed alpha
Helix 37	AE1	E	229	233	Right-handed 310
Helix 38	AE2	E	239	262	Right-handed alpha
Helix 39	AE3	E	270	299	Right-handed alpha
Helix 40	AE4	E	308	318	Right-handed alpha
Helix 41	AE5	E	319	322	Right-handed 310
Helix 42	AE6	E	334	365	Right-handed alpha

There are 18 sheets in PDB entry 6UR8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	115	117	anti-parallel
Strand 3	A	120	125	anti-parallel
Strand 4	A	64	73	anti-parallel
Strand 5	A	36	41	anti-parallel
Strand 6	A	163	167	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	51	first strand
Strand 2	A	56	62	anti-parallel
Strand 3	A	128	133	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	99	first strand
Strand 2	A	146	155	anti-parallel
Strand 3	A	204	215	anti-parallel
Strand 4	A	183	195	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	82	first strand
Strand 2	B	110	113	anti-parallel
Strand 3	B	117	120	anti-parallel
Strand 4	B	51	63	anti-parallel
Strand 5	B	123	128	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	82	first strand
Strand 2	B	110	113	anti-parallel
Strand 3	B	117	120	anti-parallel
Strand 4	B	51	63	anti-parallel
Strand 5	B	31	46	anti-parallel
Strand 6	B	158	161	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	148	first strand
Strand 2	B	197	207	anti-parallel
Strand 3	B	178	182	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	148	first strand
Strand 2	B	197	207	anti-parallel
Strand 3	B	185	189	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	82	first strand
Strand 2	C	110	113	anti-parallel
Strand 3	C	117	120	anti-parallel
Strand 4	C	51	63	anti-parallel
Strand 5	C	123	128	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	82	first strand
Strand 2	C	110	113	anti-parallel
Strand 3	C	117	120	anti-parallel
Strand 4	C	51	63	anti-parallel
Strand 5	C	31	46	anti-parallel
Strand 6	C	158	161	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	148	first strand
Strand 2	C	197	207	anti-parallel
Strand 3	C	178	182	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	148	first strand
Strand 2	C	197	207	anti-parallel
Strand 3	C	185	189	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	87	first strand
Strand 2	D	115	117	anti-parallel
Strand 3	D	120	125	anti-parallel
Strand 4	D	64	73	anti-parallel
Strand 5	D	36	41	anti-parallel
Strand 6	D	163	167	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	51	first strand
Strand 2	D	56	62	anti-parallel
Strand 3	D	128	133	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	99	first strand
Strand 2	D	146	155	anti-parallel
Strand 3	D	204	215	anti-parallel
Strand 4	D	183	195	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	82	first strand
Strand 2	E	110	113	anti-parallel
Strand 3	E	117	120	anti-parallel
Strand 4	E	51	63	anti-parallel
Strand 5	E	123	128	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	82	first strand
Strand 2	E	110	113	anti-parallel
Strand 3	E	117	120	anti-parallel
Strand 4	E	51	63	anti-parallel
Strand 5	E	31	46	anti-parallel
Strand 6	E	158	161	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	148	first strand
Strand 2	E	197	207	anti-parallel
Strand 3	E	178	182	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	148	first strand
Strand 2	E	197	207	anti-parallel
Strand 3	E	185	189	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UR8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UR8