Analysis of interatomic Contacts of Structural Units in PDB entry:
6URA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6URA entry

There are 4 chains in PDB entry 6URA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 23	SER 204
A	ASP 206	GLN 463
B	ALA 24	SER 204
B	ASP 206	ALA 228

There are 96 helices in PDB entry 6URA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	37	Right-handed alpha
Helix 2	AA2	A	60	72	Right-handed alpha
Helix 3	AA3	A	80	86	Right-handed 310
Helix 4	AA4	A	87	92	Right-handed alpha
Helix 5	AA5	A	108	112	Right-handed 310
Helix 6	AA6	A	116	125	Right-handed alpha
Helix 7	AA7	A	127	131	Right-handed 310
Helix 8	AA8	A	145	150	Right-handed alpha
Helix 9	AA9	A	157	167	Right-handed alpha
Helix 10	AB1	A	185	200	Right-handed alpha
Helix 11	AB2	A	217	237	Right-handed alpha
Helix 12	AB3	A	250	264	Right-handed alpha
Helix 13	AB4	A	273	277	Right-handed alpha
Helix 14	AB5	A	277	291	Right-handed alpha
Helix 15	AB6	A	302	307	Right-handed alpha
Helix 16	AB7	A	314	326	Right-handed alpha
Helix 17	AB8	A	342	355	Right-handed alpha
Helix 18	AB9	A	361	365	Right-handed 310
Helix 19	AC1	A	387	389	Right-handed 310
Helix 20	AC2	A	390	399	Right-handed alpha
Helix 21	AC3	A	407	412	Right-handed alpha
Helix 22	AC4	A	416	433	Right-handed alpha
Helix 23	AC5	A	436	444	Right-handed alpha
Helix 24	AC6	A	444	454	Right-handed alpha
Helix 25	AC7	B	32	37	Right-handed alpha
Helix 26	AC8	B	60	72	Right-handed alpha
Helix 27	AC9	B	80	86	Right-handed 310
Helix 28	AD1	B	87	92	Right-handed alpha
Helix 29	AD2	B	108	112	Right-handed 310
Helix 30	AD3	B	116	125	Right-handed alpha
Helix 31	AD4	B	127	131	Right-handed 310
Helix 32	AD5	B	145	150	Right-handed alpha
Helix 33	AD6	B	157	167	Right-handed alpha
Helix 34	AD7	B	185	200	Right-handed alpha
Helix 35	AD8	B	217	237	Right-handed alpha
Helix 36	AD9	B	250	264	Right-handed alpha
Helix 37	AE1	B	273	277	Right-handed alpha
Helix 38	AE2	B	277	291	Right-handed alpha
Helix 39	AE3	B	302	307	Right-handed alpha
Helix 40	AE4	B	314	326	Right-handed alpha
Helix 41	AE5	B	342	355	Right-handed alpha
Helix 42	AE6	B	361	365	Right-handed 310
Helix 43	AE7	B	387	389	Right-handed 310
Helix 44	AE8	B	390	399	Right-handed alpha
Helix 45	AE9	B	407	412	Right-handed alpha
Helix 46	AF1	B	416	434	Right-handed alpha
Helix 47	AF2	B	436	444	Right-handed alpha
Helix 48	AF3	B	444	454	Right-handed alpha
Helix 49	AF4	C	32	37	Right-handed alpha
Helix 50	AF5	C	60	72	Right-handed alpha
Helix 51	AF6	C	80	86	Right-handed 310
Helix 52	AF7	C	87	92	Right-handed alpha
Helix 53	AF8	C	108	112	Right-handed 310
Helix 54	AF9	C	116	125	Right-handed alpha
Helix 55	AG1	C	127	131	Right-handed 310
Helix 56	AG2	C	145	150	Right-handed alpha
Helix 57	AG3	C	157	167	Right-handed alpha
Helix 58	AG4	C	185	200	Right-handed alpha
Helix 59	AG5	C	217	237	Right-handed alpha
Helix 60	AG6	C	250	264	Right-handed alpha
Helix 61	AG7	C	273	277	Right-handed alpha
Helix 62	AG8	C	277	291	Right-handed alpha
Helix 63	AG9	C	302	307	Right-handed alpha
Helix 64	AH1	C	314	326	Right-handed alpha
Helix 65	AH2	C	342	355	Right-handed alpha
Helix 66	AH3	C	361	365	Right-handed 310
Helix 67	AH4	C	387	389	Right-handed 310
Helix 68	AH5	C	390	399	Right-handed alpha
Helix 69	AH6	C	407	412	Right-handed alpha
Helix 70	AH7	C	416	433	Right-handed alpha
Helix 71	AH8	C	440	443	Right-handed 310
Helix 72	AH9	C	444	454	Right-handed alpha
Helix 73	AI1	D	32	37	Right-handed alpha
Helix 74	AI2	D	60	72	Right-handed alpha
Helix 75	AI3	D	80	86	Right-handed 310
Helix 76	AI4	D	87	92	Right-handed alpha
Helix 77	AI5	D	108	112	Right-handed 310
Helix 78	AI6	D	116	125	Right-handed alpha
Helix 79	AI7	D	127	131	Right-handed 310
Helix 80	AI8	D	145	150	Right-handed alpha
Helix 81	AI9	D	157	167	Right-handed alpha
Helix 82	AJ1	D	185	200	Right-handed alpha
Helix 83	AJ2	D	217	237	Right-handed alpha
Helix 84	AJ3	D	250	264	Right-handed alpha
Helix 85	AJ4	D	273	277	Right-handed alpha
Helix 86	AJ5	D	277	291	Right-handed alpha
Helix 87	AJ6	D	302	307	Right-handed alpha
Helix 88	AJ7	D	314	326	Right-handed alpha
Helix 89	AJ8	D	342	355	Right-handed alpha
Helix 90	AJ9	D	361	365	Right-handed 310
Helix 91	AK1	D	387	389	Right-handed 310
Helix 92	AK2	D	390	399	Right-handed alpha
Helix 93	AK3	D	407	412	Right-handed alpha
Helix 94	AK4	D	416	433	Right-handed alpha
Helix 95	AK5	D	436	444	Right-handed alpha
Helix 96	AK6	D	444	454	Right-handed alpha

There are 12 sheets in PDB entry 6URA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	99	first strand
Strand 2	A	102	107	anti-parallel
Strand 3	A	48	56	anti-parallel
Strand 4	A	134	143	anti-parallel
Strand 5	A	312	313	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	175	first strand
Strand 2	A	403	405	parallel
Strand 3	A	379	383	parallel
Strand 4	A	329	331	parallel
Strand 5	A	294	298	parallel
Strand 6	A	268	272	parallel
Strand 7	A	241	245	parallel
Strand 8	A	203	205	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	358	first strand
Strand 2	A	370	371	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	99	first strand
Strand 2	B	102	107	anti-parallel
Strand 3	B	48	56	anti-parallel
Strand 4	B	134	143	anti-parallel
Strand 5	B	312	313	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	175	first strand
Strand 2	B	403	405	parallel
Strand 3	B	379	383	parallel
Strand 4	B	329	331	parallel
Strand 5	B	294	298	parallel
Strand 6	B	268	272	parallel
Strand 7	B	241	245	parallel
Strand 8	B	203	205	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	358	first strand
Strand 2	B	370	371	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	99	first strand
Strand 2	C	102	107	anti-parallel
Strand 3	C	48	56	anti-parallel
Strand 4	C	134	143	anti-parallel
Strand 5	C	312	313	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	175	first strand
Strand 2	C	403	405	parallel
Strand 3	C	379	383	parallel
Strand 4	C	329	331	parallel
Strand 5	C	294	298	parallel
Strand 6	C	268	272	parallel
Strand 7	C	241	245	parallel
Strand 8	C	203	205	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	358	first strand
Strand 2	C	370	371	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	99	first strand
Strand 2	D	102	107	anti-parallel
Strand 3	D	48	56	anti-parallel
Strand 4	D	134	143	anti-parallel
Strand 5	D	312	313	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	175	first strand
Strand 2	D	403	405	parallel
Strand 3	D	379	383	parallel
Strand 4	D	329	331	parallel
Strand 5	D	294	298	parallel
Strand 6	D	268	272	parallel
Strand 7	D	241	245	parallel
Strand 8	D	203	205	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	357	358	first strand
Strand 2	D	370	371	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6URA

Analysis of interatomic Contacts of Structural Units in PDB entry:
6URA