Analysis of interatomic Contacts of Structural Units in PDB entry:
6URF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6URF entry

There are 4 chains in PDB entry 6URF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 10TYR 547
B
 TYR -3ILE 538
C
 VAL 6ASP 548
D
 VAL 6ALA 546
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 99 helices in PDB entry 6URF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 24Right-handed 310
Helix 2
AA2
A
25 32Right-handed alpha
Helix 3
AA3
A
44 58Right-handed alpha
Helix 4
AA4
A
63 76Right-handed alpha
Helix 5
AA5
A
76 86Right-handed alpha
Helix 6
AA6
A
97 102Right-handed alpha
Helix 7
AA7
A
126 132Right-handed alpha
Helix 8
AA8
A
158 161Right-handed 310
Helix 9
AA9
A
162 178Right-handed alpha
Helix 10
AB1
A
180 184Right-handed 310
Helix 11
AB2
A
195 201Right-handed alpha
Helix 12
AB3
A
214 232Right-handed alpha
Helix 13
AB4
A
243 255Right-handed alpha
Helix 14
AB5
A
266 284Right-handed alpha
Helix 15
AB6
A
286 290Right-handed 310
Helix 16
AB7
A
300 313Right-handed alpha
Helix 17
AB8
A
314 316Right-handed 310
Helix 18
AB9
A
318 325Right-handed alpha
Helix 19
AC1
A
366 374Right-handed alpha
Helix 20
AC2
A
389 400Right-handed alpha
Helix 21
AC3
A
418 426Right-handed alpha
Helix 22
AC4
A
458 470Right-handed alpha
Helix 23
AC5
A
475 490Right-handed alpha
Helix 24
AC6
A
508 522Right-handed alpha
Helix 25
AC7
A
535 540Right-handed alpha
Helix 26
AC8
B
20 24Right-handed 310
Helix 27
AC9
B
25 33Right-handed alpha
Helix 28
AD1
B
44 58Right-handed alpha
Helix 29
AD2
B
63 75Right-handed alpha
Helix 30
AD3
B
76 83Right-handed alpha
Helix 31
AD4
B
90 97Right-handed alpha
Helix 32
AD5
B
97 108Right-handed alpha
Helix 33
AD6
B
127 131Right-handed 310
Helix 34
AD7
B
159 161Right-handed 310
Helix 35
AD8
B
162 178Right-handed alpha
Helix 36
AD9
B
180 182Right-handed 310
Helix 37
AE1
B
195 201Right-handed alpha
Helix 38
AE2
B
215 230Right-handed alpha
Helix 39
AE3
B
245 255Right-handed alpha
Helix 40
AE4
B
262 284Right-handed alpha
Helix 41
AE5
B
298 313Right-handed alpha
Helix 42
AE6
B
318 325Right-handed alpha
Helix 43
AE7
B
394 399Right-handed alpha
Helix 44
AE8
B
419 424Right-handed alpha
Helix 45
AE9
B
454 457Right-handed 310
Helix 46
AF1
B
458 470Right-handed alpha
Helix 47
AF2
B
477 481Right-handed alpha
Helix 48
AF3
B
483 491Right-handed alpha
Helix 49
AF4
B
507 518Right-handed alpha
Helix 50
AF5
B
519 525Right-handed alpha
Helix 51
AF6
C
10 15Right-handed alpha
Helix 52
AF7
C
20 24Right-handed 310
Helix 53
AF8
C
25 32Right-handed alpha
Helix 54
AF9
C
44 59Right-handed alpha
Helix 55
AG1
C
63 76Right-handed alpha
Helix 56
AG2
C
76 86Right-handed alpha
Helix 57
AG3
C
90 95Right-handed alpha
Helix 58
AG4
C
97 102Right-handed alpha
Helix 59
AG5
C
105 109Right-handed 310
Helix 60
AG6
C
126 133Right-handed alpha
Helix 61
AG7
C
163 177Right-handed alpha
Helix 62
AG8
C
180 182Right-handed 310
Helix 63
AG9
C
195 201Right-handed alpha
Helix 64
AH1
C
214 232Right-handed alpha
Helix 65
AH2
C
243 255Right-handed alpha
Helix 66
AH3
C
266 284Right-handed alpha
Helix 67
AH4
C
298 314Right-handed alpha
Helix 68
AH5
C
318 325Right-handed alpha
Helix 69
AH6
C
370 374Right-handed alpha
Helix 70
AH7
C
393 400Right-handed alpha
Helix 71
AH8
C
418 426Right-handed alpha
Helix 72
AH9
C
454 457Right-handed 310
Helix 73
AI1
C
458 470Right-handed alpha
Helix 74
AI2
C
475 490Right-handed alpha
Helix 75
AI3
C
508 525Right-handed alpha
Helix 76
AI4
C
533 539Right-handed alpha
Helix 77
AI5
D
25 32Right-handed alpha
Helix 78
AI6
D
44 58Right-handed alpha
Helix 79
AI7
D
62 76Right-handed alpha
Helix 80
AI8
D
76 87Right-handed alpha
Helix 81
AI9
D
87 97Right-handed alpha
Helix 82
AJ1
D
126 132Right-handed alpha
Helix 83
AJ2
D
133 135Right-handed 310
Helix 84
AJ3
D
161 177Right-handed alpha
Helix 85
AJ4
D
180 182Right-handed 310
Helix 86
AJ5
D
195 200Right-handed alpha
Helix 87
AJ6
D
214 232Right-handed alpha
Helix 88
AJ7
D
243 254Right-handed alpha
Helix 89
AJ8
D
266 284Right-handed alpha
Helix 90
AJ9
D
298 313Right-handed alpha
Helix 91
AK1
D
318 324Right-handed alpha
Helix 92
AK2
D
365 374Right-handed alpha
Helix 93
AK3
D
389 400Right-handed alpha
Helix 94
AK4
D
418 426Right-handed alpha
Helix 95
AK5
D
454 457Right-handed 310
Helix 96
AK6
D
458 470Right-handed alpha
Helix 97
AK7
D
475 488Right-handed alpha
Helix 98
AK8
D
502 504Right-handed 310
Helix 99
AK9
D
505 525Right-handed alpha
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There are 11 sheets in PDB entry 6URF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 120first strand
Strand 2
A
186 190parallel
Strand 3
A
145 147parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 238first strand
Strand 2
A
260 261parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 294first strand
Strand 2
A
326 328parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 379first strand
Strand 2
A
404 406parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 188first strand
Strand 2
B
143 147parallel
Strand 3
B
236 238parallel
Strand 4
B
260 261parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 329first strand
Strand 2
B
292 295parallel
Strand 3
B
377 378parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 120first strand
Strand 2
C
184 190parallel
Strand 3
C
143 147parallel
Strand 4
C
237 239parallel
Strand 5
C
260 262parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
292 294first strand
Strand 2
C
326 328parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
378 380first strand
Strand 2
C
404 407parallel
Strand 3
C
431 432parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
117 120first strand
Strand 2
D
184 190parallel
Strand 3
D
143 147parallel
Strand 4
D
236 239parallel
Strand 5
D
260 262parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
326 329first strand
Strand 2
D
292 295parallel
Strand 3
D
377 380parallel
Strand 4
D
404 406parallel
Strand 5
D
431 434parallel
Strand 6
D
451 452parallel
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