Analysis of interatomic Contacts of Structural Units in PDB entry:
6URU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6URU entry

There are 4 chains in PDB entry 6URU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4LEU 239
A
 VAL 243ILE 521
B
 THR 4LEU 239
B
 VAL 243ILE 521
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 6URU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 30Right-handed alpha
Helix 2
AA2
A
43 53Right-handed alpha
Helix 3
AA3
A
66 75Right-handed alpha
Helix 4
AA4
A
87 90Right-handed 310
Helix 5
AA5
A
178 184Right-handed 310
Helix 6
AA6
A
231 236Right-handed 310
Helix 7
AA7
A
243 247Right-handed 310
Helix 8
AA8
A
250 256Right-handed 310
Helix 9
AA9
A
257 262Right-handed alpha
Helix 10
AB1
A
327 344Right-handed alpha
Helix 11
AB2
A
363 369Right-handed alpha
Helix 12
AB3
A
373 379Right-handed alpha
Helix 13
AB4
A
389 395Right-handed alpha
Helix 14
AB5
A
398 407Right-handed alpha
Helix 15
AB6
A
419 428Right-handed alpha
Helix 16
AB7
A
440 445Right-handed alpha
Helix 17
AB8
A
468 474Right-handed alpha
Helix 18
AB9
A
476 483Right-handed alpha
Helix 19
AC1
A
489 502Right-handed alpha
Helix 20
AC2
A
506 518Right-handed alpha
Helix 21
AC3
B
12 30Right-handed alpha
Helix 22
AC4
B
43 53Right-handed alpha
Helix 23
AC5
B
54 57Right-handed 310
Helix 24
AC6
B
66 75Right-handed alpha
Helix 25
AC7
B
87 90Right-handed 310
Helix 26
AC8
B
178 182Right-handed alpha
Helix 27
AC9
B
231 236Right-handed 310
Helix 28
AD1
B
243 247Right-handed 310
Helix 29
AD2
B
250 256Right-handed 310
Helix 30
AD3
B
257 262Right-handed alpha
Helix 31
AD4
B
327 344Right-handed alpha
Helix 32
AD5
B
363 369Right-handed alpha
Helix 33
AD6
B
373 379Right-handed alpha
Helix 34
AD7
B
389 395Right-handed alpha
Helix 35
AD8
B
398 407Right-handed alpha
Helix 36
AD9
B
419 427Right-handed alpha
Helix 37
AE1
B
440 445Right-handed alpha
Helix 38
AE2
B
468 474Right-handed alpha
Helix 39
AE3
B
475 483Right-handed alpha
Helix 40
AE4
B
489 502Right-handed alpha
Helix 41
AE5
B
506 518Right-handed alpha
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There are 7 sheets in PDB entry 6URU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
34 39parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
462 467anti-parallel
Strand 3
A
345 347anti-parallel
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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 86first strand
Strand 2
A
91 101anti-parallel
Strand 3
A
107 118anti-parallel
Strand 4
A
267 275anti-parallel
Strand 5
A
280 290anti-parallel
Strand 6
A
293 303anti-parallel
Strand 7
A
187 197parallel
Strand 8
A
200 211anti-parallel
Strand 9
A
216 223anti-parallel
Strand 10
A
148 158anti-parallel
Strand 11
A
130 139anti-parallel
Strand 12
A
81 86anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 436first strand
Strand 2
A
357 362anti-parallel
Strand 3
A
447 449anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 39first strand
Strand 2
B
5 10parallel
Strand 3
B
61 65parallel
Strand 4
B
462 467anti-parallel
Strand 5
B
345 347anti-parallel
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There are 12 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 86first strand
Strand 2
B
91 101anti-parallel
Strand 3
B
107 118anti-parallel
Strand 4
B
267 275anti-parallel
Strand 5
B
280 290anti-parallel
Strand 6
B
293 303anti-parallel
Strand 7
B
187 197parallel
Strand 8
B
200 211anti-parallel
Strand 9
B
216 223anti-parallel
Strand 10
B
148 158anti-parallel
Strand 11
B
130 139anti-parallel
Strand 12
B
80 86anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
432 436first strand
Strand 2
B
357 362anti-parallel
Strand 3
B
447 449anti-parallel
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