Analysis of interatomic Contacts of Structural Units in PDB entry:
6UUG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UUG entry

There are 2 chains in PDB entry 6UUG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 9SER 395
B
 LEU 9SER 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6UUG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 34Right-handed alpha
Helix 2
AA2
A
37 48Right-handed alpha
Helix 3
AA3
A
49 52Right-handed 310
Helix 4
AA4
A
55 59Right-handed 310
Helix 5
AA5
A
64 77Right-handed alpha
Helix 6
AA6
A
79 100Right-handed alpha
Helix 7
AA7
A
101 116Right-handed alpha
Helix 8
AA8
A
209 213Right-handed 310
Helix 9
AA9
A
226 258Right-handed alpha
Helix 10
AB1
A
269 272Right-handed 310
Helix 11
AB2
A
273 308Right-handed alpha
Helix 12
AB3
A
309 311Right-handed 310
Helix 13
AB4
A
312 341Right-handed alpha
Helix 14
AB5
A
341 346Right-handed alpha
Helix 15
AB6
A
347 351Right-handed 310
Helix 16
AB7
A
357 367Right-handed alpha
Helix 17
AB8
A
371 386Right-handed alpha
Helix 18
AB9
B
11 34Right-handed alpha
Helix 19
AC1
B
37 48Right-handed alpha
Helix 20
AC2
B
49 52Right-handed 310
Helix 21
AC3
B
55 59Right-handed 310
Helix 22
AC4
B
64 79Right-handed alpha
Helix 23
AC5
B
79 100Right-handed alpha
Helix 24
AC6
B
101 116Right-handed alpha
Helix 25
AC7
B
211 213Right-handed 310
Helix 26
AC8
B
226 258Right-handed alpha
Helix 27
AC9
B
269 272Right-handed 310
Helix 28
AD1
B
273 307Right-handed alpha
Helix 29
AD2
B
308 311Right-handed 310
Helix 30
AD3
B
312 341Right-handed alpha
Helix 31
AD4
B
341 346Right-handed alpha
Helix 32
AD5
B
347 351Right-handed 310
Helix 33
AD6
B
357 367Right-handed alpha
Helix 34
AD7
B
371 386Right-handed alpha
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There are 4 sheets in PDB entry 6UUG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 122first strand
Strand 2
A
156 163parallel
Strand 3
A
169 176anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 134first strand
Strand 2
A
139 145anti-parallel
Strand 3
A
201 208anti-parallel
Strand 4
A
182 184anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 122first strand
Strand 2
B
156 163parallel
Strand 3
B
169 176anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 134first strand
Strand 2
B
138 145anti-parallel
Strand 3
B
201 209anti-parallel
Strand 4
B
182 184anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il