Analysis of interatomic Contacts of Structural Units in PDB entry:
6UUJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UUJ entry

There are 12 chains in PDB entry 6UUJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 6	GLY 78
B	ALA 2	ALA 168
C	ASN 6	PHE 284
D	PRO 7	VAL 77
E	ALA 2	SER 167
F	ASN 6	PHE 284
G	VAL 6	VAL 79
H	ALA 2	SER 167
I	ASN 6	PHE 284
J	PRO 7	VAL 77
K	ALA 2	ALA 168
L	ASN 6	PHE 284

There are 74 helices in PDB entry 6UUJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	31	Right-handed alpha
Helix 2	AA2	A	31	37	Right-handed alpha
Helix 3	AA3	A	44	74	Right-handed alpha
Helix 4	AA4	B	5	9	Right-handed 310
Helix 5	AA5	B	10	20	Right-handed alpha
Helix 6	AA6	B	24	50	Right-handed alpha
Helix 7	AA7	B	66	73	Right-handed alpha
Helix 8	AA8	B	74	107	Right-handed alpha
Helix 9	AA9	B	109	124	Right-handed alpha
Helix 10	AB1	B	134	164	Right-handed alpha
Helix 11	AB2	C	12	22	Right-handed alpha
Helix 12	AB3	C	39	41	Right-handed 310
Helix 13	AB4	C	42	58	Right-handed alpha
Helix 14	AB5	C	67	79	Right-handed alpha
Helix 15	AB6	C	143	145	Right-handed 310
Helix 16	AB7	C	146	151	Right-handed alpha
Helix 17	AB8	C	170	181	Right-handed alpha
Helix 18	AB9	C	199	206	Right-handed alpha
Helix 19	AC1	C	263	276	Right-handed alpha
Helix 20	AC2	D	10	31	Right-handed alpha
Helix 21	AC3	D	31	37	Right-handed alpha
Helix 22	AC4	D	44	74	Right-handed alpha
Helix 23	AC5	E	5	9	Right-handed 310
Helix 24	AC6	E	10	20	Right-handed alpha
Helix 25	AC7	E	24	50	Right-handed alpha
Helix 26	AC8	E	65	73	Right-handed alpha
Helix 27	AC9	E	74	107	Right-handed alpha
Helix 28	AD1	E	109	124	Right-handed alpha
Helix 29	AD2	E	134	164	Right-handed alpha
Helix 30	AD3	F	12	23	Right-handed alpha
Helix 31	AD4	F	39	41	Right-handed 310
Helix 32	AD5	F	42	58	Right-handed alpha
Helix 33	AD6	F	67	79	Right-handed alpha
Helix 34	AD7	F	143	145	Right-handed 310
Helix 35	AD8	F	146	151	Right-handed alpha
Helix 36	AD9	F	170	181	Right-handed alpha
Helix 37	AE1	F	199	206	Right-handed alpha
Helix 38	AE2	F	263	276	Right-handed alpha
Helix 39	AE3	G	10	31	Right-handed alpha
Helix 40	AE4	G	31	37	Right-handed alpha
Helix 41	AE5	G	44	74	Right-handed alpha
Helix 42	AE6	H	5	9	Right-handed 310
Helix 43	AE7	H	10	20	Right-handed alpha
Helix 44	AE8	H	24	50	Right-handed alpha
Helix 45	AE9	H	66	73	Right-handed alpha
Helix 46	AF1	H	74	107	Right-handed alpha
Helix 47	AF2	H	109	124	Right-handed alpha
Helix 48	AF3	H	134	164	Right-handed alpha
Helix 49	AF4	I	12	22	Right-handed alpha
Helix 50	AF5	I	42	58	Right-handed alpha
Helix 51	AF6	I	67	79	Right-handed alpha
Helix 52	AF7	I	143	145	Right-handed 310
Helix 53	AF8	I	146	151	Right-handed alpha
Helix 54	AF9	I	170	181	Right-handed alpha
Helix 55	AG1	I	199	206	Right-handed alpha
Helix 56	AG2	I	263	276	Right-handed alpha
Helix 57	AG3	J	10	31	Right-handed alpha
Helix 58	AG4	J	31	37	Right-handed alpha
Helix 59	AG5	J	44	74	Right-handed alpha
Helix 60	AG6	K	5	9	Right-handed 310
Helix 61	AG7	K	10	20	Right-handed alpha
Helix 62	AG8	K	24	50	Right-handed alpha
Helix 63	AG9	K	66	73	Right-handed alpha
Helix 64	AH1	K	74	107	Right-handed alpha
Helix 65	AH2	K	109	124	Right-handed alpha
Helix 66	AH3	K	134	164	Right-handed alpha
Helix 67	AH4	L	12	23	Right-handed alpha
Helix 68	AH5	L	42	58	Right-handed alpha
Helix 69	AH6	L	67	79	Right-handed alpha
Helix 70	AH7	L	143	148	Right-handed 310
Helix 71	AH8	L	149	153	Right-handed 310
Helix 72	AH9	L	170	181	Right-handed alpha
Helix 73	AI1	L	199	206	Right-handed alpha
Helix 74	AI2	L	263	276	Right-handed alpha

There are 8 sheets in PDB entry 6UUJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	11	first strand
Strand 2	C	133	139	anti-parallel
Strand 3	C	124	129	anti-parallel
Strand 4	C	100	107	anti-parallel
Strand 5	C	82	89	anti-parallel
Strand 6	C	212	220	anti-parallel
Strand 7	C	233	237	anti-parallel
Strand 8	C	242	249	anti-parallel
Strand 9	C	255	261	anti-parallel
Strand 10	C	166	169	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	11	first strand
Strand 2	C	133	139	anti-parallel
Strand 3	C	124	129	anti-parallel
Strand 4	C	100	107	anti-parallel
Strand 5	C	82	89	anti-parallel
Strand 6	C	212	220	anti-parallel
Strand 7	C	227	228	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	11	first strand
Strand 2	F	133	139	anti-parallel
Strand 3	F	124	130	anti-parallel
Strand 4	F	100	107	anti-parallel
Strand 5	F	82	89	anti-parallel
Strand 6	F	212	220	anti-parallel
Strand 7	F	233	237	anti-parallel
Strand 8	F	242	249	anti-parallel
Strand 9	F	255	261	anti-parallel
Strand 10	F	166	169	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	11	first strand
Strand 2	F	133	139	anti-parallel
Strand 3	F	124	130	anti-parallel
Strand 4	F	100	107	anti-parallel
Strand 5	F	82	89	anti-parallel
Strand 6	F	212	220	anti-parallel
Strand 7	F	227	228	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	7	11	first strand
Strand 2	I	133	139	anti-parallel
Strand 3	I	124	129	anti-parallel
Strand 4	I	100	107	anti-parallel
Strand 5	I	82	89	anti-parallel
Strand 6	I	212	221	anti-parallel
Strand 7	I	233	237	anti-parallel
Strand 8	I	242	249	anti-parallel
Strand 9	I	255	261	anti-parallel
Strand 10	I	166	169	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	7	11	first strand
Strand 2	I	133	139	anti-parallel
Strand 3	I	124	129	anti-parallel
Strand 4	I	100	107	anti-parallel
Strand 5	I	82	89	anti-parallel
Strand 6	I	212	221	anti-parallel
Strand 7	I	226	228	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	7	11	first strand
Strand 2	L	133	139	anti-parallel
Strand 3	L	124	129	anti-parallel
Strand 4	L	100	107	anti-parallel
Strand 5	L	82	89	anti-parallel
Strand 6	L	212	221	anti-parallel
Strand 7	L	233	237	anti-parallel
Strand 8	L	242	249	anti-parallel
Strand 9	L	255	261	anti-parallel
Strand 10	L	166	169	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	7	11	first strand
Strand 2	L	133	139	anti-parallel
Strand 3	L	124	129	anti-parallel
Strand 4	L	100	107	anti-parallel
Strand 5	L	82	89	anti-parallel
Strand 6	L	212	221	anti-parallel
Strand 7	L	226	228	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UUJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UUJ