Analysis of interatomic Contacts of Structural Units in PDB entry:
6UWD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UWD entry

There is 1 chain in PDB entry 6UWD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 12SER 268
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 6UWD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 16Right-handed 310
Helix 2
AA2
A
36 50Right-handed alpha
Helix 3
AA3
A
68 79Right-handed alpha
Helix 4
AA4
A
88 102Right-handed alpha
Helix 5
AA5
A
133 137Right-handed 310
Helix 6
AA6
A
139 150Right-handed alpha
Helix 7
AA7
A
169 171Right-handed 310
Helix 8
AA8
A
172 184Right-handed alpha
Helix 9
AA9
A
190 201Right-handed alpha
Helix 10
AB1
A
211 216Right-handed alpha
Helix 11
AB2
A
216 228Right-handed alpha
Helix 12
AB3
A
229 234Right-handed alpha
Helix 13
AB4
A
238 255Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 6UWD.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 112first strand
Strand 2
A
81 86parallel
Strand 3
A
59 63parallel
Strand 4
A
125 131parallel
Strand 5
A
151 164parallel
Strand 6
A
258 266anti-parallel
Strand 7
A
204 210anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il