Analysis of interatomic Contacts of Structural Units in PDB entry:
6UXD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UXD entry

There are 2 chains in PDB entry 6UXD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 34PHE 247
B
 LEU 35PHE 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 6UXD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 44Right-handed alpha
Helix 2
AA2
A
87 94Right-handed alpha
Helix 3
AA3
A
95 100Right-handed alpha
Helix 4
AA4
A
101 103Right-handed 310
Helix 5
AA5
A
137 147Right-handed alpha
Helix 6
AA6
A
177 180Right-handed 310
Helix 7
AA7
B
38 44Right-handed alpha
Helix 8
AA8
B
84 94Right-handed alpha
Helix 9
AA9
B
95 100Right-handed alpha
Helix 10
AB1
B
101 103Right-handed 310
Helix 11
AB2
B
140 147Right-handed alpha
Helix 12
AB3
B
177 180Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 6UXD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
148 152anti-parallel
Strand 3
A
182 188anti-parallel
Strand 4
A
200 206anti-parallel
Strand 5
A
216 219anti-parallel
Strand 6
A
226 234anti-parallel
Strand 7
A
172 175anti-parallel
Strand 8
B
157 160anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 234first strand
Strand 2
A
51 56anti-parallel
Strand 3
A
59 68anti-parallel
Strand 4
A
73 80anti-parallel
Strand 5
A
109 114anti-parallel
Strand 6
A
120 125anti-parallel
Strand 7
A
128 131anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 160first strand
Strand 2
B
172 175anti-parallel
Strand 3
B
224 234anti-parallel
Strand 4
B
51 56anti-parallel
Strand 5
B
59 68anti-parallel
Strand 6
B
72 80anti-parallel
Strand 7
B
107 115anti-parallel
Strand 8
B
120 125anti-parallel
Strand 9
B
128 130anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 152first strand
Strand 2
B
182 188anti-parallel
Strand 3
B
200 206anti-parallel
Strand 4
B
216 221anti-parallel
Strand 5
B
224 234anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il