Analysis of interatomic Contacts of Structural Units in PDB entry:
6UXJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UXJ entry

There are 3 chains in PDB entry 6UXJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	LYS 470
B	HIS 0	ASP 471
C	SER -1	GLY 339

There are102 helices in PDB entry 6UXJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	9	Right-handed alpha
Helix 2	AA2	A	11	16	Right-handed alpha
Helix 3	AA3	A	16	33	Right-handed alpha
Helix 4	AA4	A	44	52	Right-handed alpha
Helix 5	AA5	A	53	58	Right-handed 310
Helix 6	AA6	A	72	90	Right-handed alpha
Helix 7	AA7	A	105	118	Right-handed alpha
Helix 8	AA8	A	128	132	Right-handed 310
Helix 9	AA9	A	134	138	Right-handed 310
Helix 10	AB1	A	148	152	Right-handed 310
Helix 11	AB2	A	169	181	Right-handed alpha
Helix 12	AB3	A	197	209	Right-handed alpha
Helix 13	AB4	A	219	225	Right-handed alpha
Helix 14	AB5	A	230	234	Right-handed 310
Helix 15	AB6	A	275	284	Right-handed alpha
Helix 16	AB7	A	292	307	Right-handed alpha
Helix 17	AB8	A	308	332	Right-handed alpha
Helix 18	AB9	A	338	340	Right-handed 310
Helix 19	AC1	A	351	354	Right-handed 310
Helix 20	AC2	A	356	367	Right-handed alpha
Helix 21	AC3	A	392	398	Right-handed alpha
Helix 22	AC4	A	401	427	Right-handed alpha
Helix 23	AC5	A	429	436	Right-handed alpha
Helix 24	AC6	A	440	455	Right-handed alpha
Helix 25	AC7	A	463	467	Right-handed 310
Helix 26	AC8	B	3	9	Right-handed alpha
Helix 27	AC9	B	11	16	Right-handed alpha
Helix 28	AD1	B	16	32	Right-handed alpha
Helix 29	AD2	B	44	52	Right-handed alpha
Helix 30	AD3	B	53	58	Right-handed 310
Helix 31	AD4	B	72	90	Right-handed alpha
Helix 32	AD5	B	105	118	Right-handed alpha
Helix 33	AD6	B	128	132	Right-handed 310
Helix 34	AD7	B	134	138	Right-handed 310
Helix 35	AD8	B	148	152	Right-handed 310
Helix 36	AD9	B	169	181	Right-handed alpha
Helix 37	AE1	B	197	209	Right-handed alpha
Helix 38	AE2	B	219	225	Right-handed alpha
Helix 39	AE3	B	230	234	Right-handed 310
Helix 40	AE4	B	275	284	Right-handed alpha
Helix 41	AE5	B	292	307	Right-handed alpha
Helix 42	AE6	B	308	332	Right-handed alpha
Helix 43	AE7	B	338	340	Right-handed 310
Helix 44	AE8	B	351	354	Right-handed 310
Helix 45	AE9	B	356	367	Right-handed alpha
Helix 46	AF1	B	392	398	Right-handed alpha
Helix 47	AF2	B	401	427	Right-handed alpha
Helix 48	AF3	B	429	434	Right-handed alpha
Helix 49	AF4	B	435	438	Right-handed 310
Helix 50	AF5	B	440	456	Right-handed alpha
Helix 51	AF6	B	463	467	Right-handed 310
Helix 52	AF7	C	3	9	Right-handed alpha
Helix 53	AF8	C	11	16	Right-handed alpha
Helix 54	AF9	C	16	33	Right-handed alpha
Helix 55	AG1	C	44	52	Right-handed alpha
Helix 56	AG2	C	53	58	Right-handed 310
Helix 57	AG3	C	72	90	Right-handed alpha
Helix 58	AG4	C	105	118	Right-handed alpha
Helix 59	AG5	C	128	132	Right-handed 310
Helix 60	AG6	C	134	138	Right-handed 310
Helix 61	AG7	C	148	152	Right-handed 310
Helix 62	AG8	C	169	181	Right-handed alpha
Helix 63	AG9	C	197	209	Right-handed alpha
Helix 64	AH1	C	219	225	Right-handed alpha
Helix 65	AH2	C	230	234	Right-handed 310
Helix 66	AH3	C	275	284	Right-handed alpha
Helix 67	AH4	C	292	307	Right-handed alpha
Helix 68	AH5	C	308	332	Right-handed alpha
Helix 69	AH6	C	338	340	Right-handed 310
Helix 70	AH7	C	351	354	Right-handed 310
Helix 71	AH8	C	356	367	Right-handed alpha
Helix 72	AH9	C	392	398	Right-handed alpha
Helix 73	AI1	C	401	427	Right-handed alpha
Helix 74	AI2	C	429	436	Right-handed alpha
Helix 75	AI3	C	440	455	Right-handed alpha
Helix 76	AI4	C	463	467	Right-handed 310
Helix 77	AI5	D	3	9	Right-handed alpha
Helix 78	AI6	D	11	16	Right-handed alpha
Helix 79	AI7	D	16	32	Right-handed alpha
Helix 80	AI8	D	44	52	Right-handed alpha
Helix 81	AI9	D	53	58	Right-handed 310
Helix 82	AJ1	D	72	90	Right-handed alpha
Helix 83	AJ2	D	105	118	Right-handed alpha
Helix 84	AJ3	D	128	132	Right-handed 310
Helix 85	AJ4	D	134	138	Right-handed 310
Helix 86	AJ5	D	148	152	Right-handed 310
Helix 87	AJ6	D	169	181	Right-handed alpha
Helix 88	AJ7	D	197	209	Right-handed alpha
Helix 89	AJ8	D	219	225	Right-handed alpha
Helix 90	AJ9	D	230	234	Right-handed 310
Helix 91	AK1	D	275	284	Right-handed alpha
Helix 92	AK2	D	292	307	Right-handed alpha
Helix 93	AK3	D	308	332	Right-handed alpha
Helix 94	AK4	D	338	340	Right-handed 310
Helix 95	AK5	D	351	354	Right-handed 310
Helix 96	AK6	D	356	367	Right-handed alpha
Helix 97	AK7	D	392	398	Right-handed alpha
Helix 98	AK8	D	401	427	Right-handed alpha
Helix 99	AK9	D	429	434	Right-handed alpha
Helix 100	AL1	D	435	438	Right-handed 310
Helix 101	AL2	D	440	456	Right-handed alpha
Helix 102	AL3	D	463	467	Right-handed 310

There are 16 sheets in PDB entry 6UXJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	35	first strand
Strand 2	A	369	370	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	63	first strand
Strand 2	A	66	67	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	100	first strand
Strand 2	A	252	257	anti-parallel
Strand 3	A	237	241	anti-parallel
Strand 4	A	211	215	parallel
Strand 5	A	184	187	parallel
Strand 6	A	123	125	parallel
Strand 7	A	155	156	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	336	first strand
Strand 2	A	345	349	anti-parallel
Strand 3	A	387	391	anti-parallel
Strand 4	A	372	374	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	369	370	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	63	first strand
Strand 2	B	66	67	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	100	first strand
Strand 2	B	252	257	anti-parallel
Strand 3	B	237	241	anti-parallel
Strand 4	B	211	215	parallel
Strand 5	B	184	187	parallel
Strand 6	B	123	125	parallel
Strand 7	B	155	156	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	336	first strand
Strand 2	B	345	349	anti-parallel
Strand 3	B	387	391	anti-parallel
Strand 4	B	372	374	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	35	first strand
Strand 2	C	369	370	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	63	first strand
Strand 2	C	66	67	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	100	first strand
Strand 2	C	252	257	anti-parallel
Strand 3	C	237	241	anti-parallel
Strand 4	C	211	215	parallel
Strand 5	C	184	187	parallel
Strand 6	C	123	125	parallel
Strand 7	C	155	156	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	336	first strand
Strand 2	C	345	349	anti-parallel
Strand 3	C	387	391	anti-parallel
Strand 4	C	372	374	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	35	first strand
Strand 2	D	369	370	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	63	first strand
Strand 2	D	66	67	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	100	first strand
Strand 2	D	252	257	anti-parallel
Strand 3	D	237	241	anti-parallel
Strand 4	D	211	215	parallel
Strand 5	D	184	187	parallel
Strand 6	D	123	125	parallel
Strand 7	D	155	156	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	335	336	first strand
Strand 2	D	345	349	anti-parallel
Strand 3	D	387	391	anti-parallel
Strand 4	D	372	374	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UXJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UXJ