Analysis of interatomic Contacts of Structural Units in PDB entry:
6UXU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UXU entry

There are 2 chains in PDB entry 6UXU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 28GLN 327
B
 LEU 28GLN 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6UXU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 60Right-handed alpha
Helix 2
AA2
A
85 101Right-handed alpha
Helix 3
AA3
A
114 119Right-handed alpha
Helix 4
AA4
A
120 124Right-handed 310
Helix 5
AA5
A
134 156Right-handed alpha
Helix 6
AA6
A
216 218Right-handed 310
Helix 7
AA7
A
232 247Right-handed alpha
Helix 8
AA8
A
265 286Right-handed alpha
Helix 9
AA9
A
289 297Right-handed alpha
Helix 10
AB1
A
299 303Right-handed 310
Helix 11
AB2
A
307 315Right-handed alpha
Helix 12
AB3
A
315 325Right-handed alpha
Helix 13
AB4
B
53 60Right-handed alpha
Helix 14
AB5
B
85 100Right-handed alpha
Helix 15
AB6
B
114 119Right-handed alpha
Helix 16
AB7
B
120 124Right-handed 310
Helix 17
AB8
B
134 156Right-handed alpha
Helix 18
AB9
B
216 218Right-handed 310
Helix 19
AC1
B
232 247Right-handed alpha
Helix 20
AC2
B
265 286Right-handed alpha
Helix 21
AC3
B
289 297Right-handed alpha
Helix 22
AC4
B
299 303Right-handed 310
Helix 23
AC5
B
307 312Right-handed alpha
Helix 24
AC6
B
315 325Right-handed alpha
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There are 4 sheets in PDB entry 6UXU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 43first strand
Strand 2
A
46 51anti-parallel
Strand 3
A
68 72anti-parallel
Strand 4
A
77 80anti-parallel
Strand 5
A
105 109parallel
Strand 6
A
129 133parallel
Strand 7
A
171 173parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 182first strand
Strand 2
A
187 191anti-parallel
Strand 3
A
203 206anti-parallel
Strand 4
A
211 215anti-parallel
Strand 5
A
252 255parallel
Strand 6
A
261 262anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 43first strand
Strand 2
B
46 51anti-parallel
Strand 3
B
68 72anti-parallel
Strand 4
B
77 80anti-parallel
Strand 5
B
105 109parallel
Strand 6
B
129 133parallel
Strand 7
B
171 173parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 182first strand
Strand 2
B
187 191anti-parallel
Strand 3
B
203 206anti-parallel
Strand 4
B
211 215anti-parallel
Strand 5
B
252 255parallel
Strand 6
B
261 262anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il