Analysis of interatomic Contacts of Structural Units in PDB entry:
6UY4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UY4 entry

There is 1 chain in PDB entry 6UY4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 25THR 378
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6UY4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 34Right-handed alpha
Helix 2
AA2
A
34 43Right-handed alpha
Helix 3
AA3
A
45 59Right-handed alpha
Helix 4
AA4
A
70 74Right-handed 310
Helix 5
AA5
A
98 106Right-handed alpha
Helix 6
AA6
A
132 134Right-handed 310
Helix 7
AA7
A
146 154Right-handed alpha
Helix 8
AA8
A
178 191Right-handed alpha
Helix 9
AA9
A
214 231Right-handed alpha
Helix 10
AB1
A
247 260Right-handed alpha
Helix 11
AB2
A
261 264Right-handed 310
Helix 12
AB3
A
277 283Right-handed alpha
Helix 13
AB4
A
307 322Right-handed alpha
Helix 14
AB5
A
336 347Right-handed alpha
Helix 15
AB6
A
354 361Right-handed alpha
Helix 16
AB7
A
363 377Right-handed alpha
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There are 3 sheets in PDB entry 6UY4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
80 82anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
109 115parallel
Strand 3
A
165 170parallel
Strand 4
A
196 200parallel
Strand 5
A
238 242parallel
Strand 6
A
267 270parallel
Strand 7
A
328 331parallel
Strand 8
A
350 353parallel
Strand 9
A
86 88parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 131first strand
Strand 2
A
136 139anti-parallel
Strand 3
A
301 304anti-parallel
Strand 4
A
274 275anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il