Analysis of interatomic Contacts of Structural Units in PDB entry:
6UYE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UYE entry

There are 12 chains in PDB entry 6UYE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 32	GLU 292
D	VAL 503	GLY 598
G	GLN 1	ALA 132
J	ILE 2	THR 109
B	SER 32	GLU 292
E	VAL 503	GLY 598
H	GLN 1	ALA 132
K	ILE 2	THR 109
C	SER 32	GLU 292
F	VAL 503	GLY 598
I	GLN 1	ALA 132
L	ILE 2	THR 109

There are 30 helices in PDB entry 6UYE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	71	73	Right-handed 310
Helix 2	AA2	A	78	82	Right-handed 310
Helix 3	AA3	A	249	264	Right-handed alpha
Helix 4	AA4	D	538	541	Right-handed 310
Helix 5	AA5	D	553	575	Right-handed alpha
Helix 6	AA6	D	583	597	Right-handed alpha
Helix 7	AA7	G	28	32	Right-handed 310
Helix 8	AA8	G	62	65	Right-handed 310
Helix 9	AA9	G	87	91	Right-handed 310
Helix 10	AB1	J	79	83	Right-handed 310
Helix 11	AB2	B	71	73	Right-handed 310
Helix 12	AB3	B	78	82	Right-handed 310
Helix 13	AB4	B	249	264	Right-handed alpha
Helix 14	AB5	E	538	541	Right-handed 310
Helix 15	AB6	E	553	575	Right-handed alpha
Helix 16	AB7	E	583	597	Right-handed alpha
Helix 17	AB8	H	28	32	Right-handed 310
Helix 18	AB9	H	62	65	Right-handed 310
Helix 19	AC1	H	87	91	Right-handed 310
Helix 20	AC2	K	79	83	Right-handed 310
Helix 21	AC3	C	71	73	Right-handed 310
Helix 22	AC4	C	78	82	Right-handed 310
Helix 23	AC5	C	249	264	Right-handed alpha
Helix 24	AC6	F	538	541	Right-handed 310
Helix 25	AC7	F	553	575	Right-handed alpha
Helix 26	AC8	F	583	597	Right-handed alpha
Helix 27	AC9	I	28	32	Right-handed 310
Helix 28	AD1	I	62	65	Right-handed 310
Helix 29	AD2	I	87	91	Right-handed 310
Helix 30	AD3	L	79	83	Right-handed 310

There are 30 sheets in PDB entry 6UYE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	36	38	anti-parallel
Strand 3	A	179	185	parallel
Strand 4	A	63	69	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	89	first strand
Strand 2	A	151	154	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	161	first strand
Strand 2	A	165	167	anti-parallel
Strand 3	A	96	98	anti-parallel
Strand 4	D	580	581	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	103	first strand
Strand 2	D	514	520	anti-parallel
Strand 3	D	543	549	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	114	first strand
Strand 2	A	137	144	parallel
Strand 3	A	216	223	parallel
Strand 4	A	231	237	anti-parallel
Strand 5	A	240	243	anti-parallel
Strand 6	A	273	275	parallel
Strand 7	G	111	113	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	5	first strand
Strand 2	G	17	25	anti-parallel
Strand 3	G	78	84	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	125	129	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	34	39	anti-parallel
Strand 5	G	45	51	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	125	129	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	118	121	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	6	first strand
Strand 2	J	19	25	anti-parallel
Strand 3	J	70	75	anti-parallel
Strand 4	J	62	67	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	102	106	parallel
Strand 3	J	84	90	anti-parallel
Strand 4	J	33	38	anti-parallel
Strand 5	J	45	49	anti-parallel
Strand 6	J	53	54	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	45	first strand
Strand 2	B	36	38	anti-parallel
Strand 3	B	179	185	parallel
Strand 4	B	63	69	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	89	first strand
Strand 2	B	151	154	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	161	first strand
Strand 2	B	165	167	anti-parallel
Strand 3	B	96	98	anti-parallel
Strand 4	E	580	581	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	103	first strand
Strand 2	E	514	520	anti-parallel
Strand 3	E	543	549	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	114	first strand
Strand 2	B	137	144	parallel
Strand 3	B	216	223	parallel
Strand 4	B	231	237	anti-parallel
Strand 5	B	240	243	anti-parallel
Strand 6	B	273	275	parallel
Strand 7	H	111	113	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	5	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	78	84	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	125	129	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	125	129	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	118	121	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	6	first strand
Strand 2	K	19	25	anti-parallel
Strand 3	K	70	75	anti-parallel
Strand 4	K	62	67	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	13	first strand
Strand 2	K	102	106	parallel
Strand 3	K	84	90	anti-parallel
Strand 4	K	33	38	anti-parallel
Strand 5	K	45	49	anti-parallel
Strand 6	K	53	54	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	45	first strand
Strand 2	C	36	38	anti-parallel
Strand 3	C	179	185	parallel
Strand 4	C	63	69	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	89	first strand
Strand 2	C	151	154	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	161	first strand
Strand 2	C	165	167	anti-parallel
Strand 3	C	96	98	anti-parallel
Strand 4	F	580	581	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	F	514	520	anti-parallel
Strand 3	F	543	549	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	114	first strand
Strand 2	C	137	144	parallel
Strand 3	C	216	223	parallel
Strand 4	C	231	237	anti-parallel
Strand 5	C	240	243	anti-parallel
Strand 6	C	273	275	parallel
Strand 7	I	111	113	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	5	first strand
Strand 2	I	17	25	anti-parallel
Strand 3	I	78	84	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	125	129	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	34	39	anti-parallel
Strand 5	I	45	51	anti-parallel
Strand 6	I	58	60	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	125	129	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	118	121	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UYE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UYE