Analysis of interatomic Contacts of Structural Units in PDB entry:
6UYK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UYK entry

There are 4 chains in PDB entry 6UYK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 30ILE 290
B
 ILE 28GLY 295
C
 GLY 16LEU 293
D
 GLY 30GLU 292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 6UYK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 58Right-handed alpha
Helix 2
AA2
A
74 79Right-handed alpha
Helix 3
AA3
A
84 89Right-handed alpha
Helix 4
AA4
A
100 105Right-handed alpha
Helix 5
AA5
A
126 140Right-handed alpha
Helix 6
AA6
A
165 170Right-handed alpha
Helix 7
AA7
A
180 199Right-handed alpha
Helix 8
AA8
A
218 227Right-handed alpha
Helix 9
AA9
A
241 246Right-handed alpha
Helix 10
AB1
A
256 276Right-handed alpha
Helix 11
AB2
B
43 58Right-handed alpha
Helix 12
AB3
B
74 79Right-handed alpha
Helix 13
AB4
B
84 90Right-handed alpha
Helix 14
AB5
B
100 105Right-handed alpha
Helix 15
AB6
B
109 111Right-handed 310
Helix 16
AB7
B
126 141Right-handed alpha
Helix 17
AB8
B
164 169Right-handed 310
Helix 18
AB9
B
180 199Right-handed alpha
Helix 19
AC1
B
216 227Right-handed alpha
Helix 20
AC2
B
241 246Right-handed alpha
Helix 21
AC3
B
256 275Right-handed alpha
Helix 22
AC4
C
43 58Right-handed alpha
Helix 23
AC5
C
74 79Right-handed alpha
Helix 24
AC6
C
84 91Right-handed alpha
Helix 25
AC7
C
95 99Right-handed 310
Helix 26
AC8
C
100 105Right-handed alpha
Helix 27
AC9
C
109 111Right-handed 310
Helix 28
AD1
C
126 141Right-handed alpha
Helix 29
AD2
C
164 169Right-handed 310
Helix 30
AD3
C
180 198Right-handed alpha
Helix 31
AD4
C
217 226Right-handed alpha
Helix 32
AD5
C
241 246Right-handed alpha
Helix 33
AD6
C
249 253Right-handed 310
Helix 34
AD7
C
256 276Right-handed alpha
Helix 35
AD8
C
286 293Right-handed alpha
Helix 36
AD9
D
43 58Right-handed alpha
Helix 37
AE1
D
74 79Right-handed alpha
Helix 38
AE2
D
84 91Right-handed alpha
Helix 39
AE3
D
95 99Right-handed 310
Helix 40
AE4
D
100 104Right-handed alpha
Helix 41
AE5
D
109 111Right-handed 310
Helix 42
AE6
D
126 142Right-handed alpha
Helix 43
AE7
D
164 169Right-handed 310
Helix 44
AE8
D
180 198Right-handed alpha
Helix 45
AE9
D
218 227Right-handed alpha
Helix 46
AF1
D
256 276Right-handed alpha
Helix 47
AF2
D
287 292Right-handed alpha
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There are 4 sheets in PDB entry 6UYK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
113 116anti-parallel
Strand 3
A
62 66parallel
Strand 4
A
149 155parallel
Strand 5
A
32 38parallel
Strand 6
A
172 176parallel
Strand 7
A
204 209parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
B
113 116anti-parallel
Strand 3
B
62 66parallel
Strand 4
B
149 153parallel
Strand 5
B
32 38parallel
Strand 6
B
172 177parallel
Strand 7
B
204 210parallel
Strand 8
B
230 233parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
106 107first strand
Strand 2
C
113 116anti-parallel
Strand 3
C
62 66parallel
Strand 4
C
149 155parallel
Strand 5
C
32 38parallel
Strand 6
C
172 176parallel
Strand 7
C
204 210parallel
Strand 8
C
230 233parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
105 107first strand
Strand 2
D
113 116anti-parallel
Strand 3
D
62 66parallel
Strand 4
D
149 155parallel
Strand 5
D
32 38parallel
Strand 6
D
172 176parallel
Strand 7
D
204 209parallel
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