Analysis of interatomic Contacts of Structural Units in PDB entry:
6UYU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UYU entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 6UYU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 19LEU 44
A
 LYS 46GLY 97
B
 GLU 6ILE 14
C
 GLY 19LEU 44
C
 LYS 46GLN 94
D
 ALA 7ILE 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6UYU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 56Right-handed alpha
Helix 2
AA2
A
58 60Right-handed 310
Helix 3
AA3
A
76 81Right-handed alpha
Helix 4
AA4
C
44 56Right-handed alpha
Helix 5
AA5
C
58 60Right-handed 310
Helix 6
AA6
C
76 81Right-handed alpha
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There are 2 sheets in PDB entry 6UYU. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
62 66anti-parallel
Strand 3
A
87 92anti-parallel
Strand 4
A
21 27parallel
Strand 5
A
33 39anti-parallel
Strand 6
B
11 13parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 70first strand
Strand 2
C
62 66anti-parallel
Strand 3
C
87 92anti-parallel
Strand 4
C
21 27parallel
Strand 5
C
33 39anti-parallel
Strand 6
D
11 13parallel
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