Analysis of interatomic Contacts of Structural Units in PDB entry:
6UZ1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UZ1 entry

There are 10 chains in PDB entry 6UZ1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	GLU 275
B	MET 0	MET 99
C	LEU 1	VAL 9
F	GLY 1	GLU 275
G	MET 0	MET 99
H	LEU 1	VAL 9
I	GLU 2	ASP 117
J	ALA 2	THR 117
D	GLU 2	THR 115
E	GLY 3	VAL 116

There are 15 helices in PDB entry 6UZ1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	85	Right-handed alpha
Helix 2	AA2	A	137	150	Right-handed alpha
Helix 3	AA3	A	151	161	Right-handed alpha
Helix 4	AA4	A	163	175	Right-handed alpha
Helix 5	AA5	A	253	255	Right-handed 310
Helix 6	AA6	F	49	55	Right-handed 310
Helix 7	AA7	F	56	85	Right-handed alpha
Helix 8	AA8	F	137	150	Right-handed alpha
Helix 9	AA9	F	151	161	Right-handed alpha
Helix 10	AB1	F	163	175	Right-handed alpha
Helix 11	AB2	F	253	255	Right-handed 310
Helix 12	AB3	I	81	85	Right-handed 310
Helix 13	AB4	J	83	87	Right-handed 310
Helix 14	AB5	D	81	85	Right-handed 310
Helix 15	AB6	E	83	87	Right-handed 310

There are 28 sheets in PDB entry 6UZ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	31	37	anti-parallel
Strand 3	A	21	28	anti-parallel
Strand 4	A	3	12	anti-parallel
Strand 5	A	94	103	anti-parallel
Strand 6	A	109	118	anti-parallel
Strand 7	A	121	126	anti-parallel
Strand 8	A	133	135	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	193	first strand
Strand 2	A	198	208	anti-parallel
Strand 3	A	241	250	anti-parallel
Strand 4	A	229	230	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	193	first strand
Strand 2	A	198	208	anti-parallel
Strand 3	A	241	250	anti-parallel
Strand 4	A	234	235	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	224	first strand
Strand 2	A	213	219	anti-parallel
Strand 3	A	257	263	anti-parallel
Strand 4	A	270	273	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	50	51	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	55	56	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	36	41	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	47	first strand
Strand 2	F	31	37	anti-parallel
Strand 3	F	21	28	anti-parallel
Strand 4	F	3	12	anti-parallel
Strand 5	F	94	103	anti-parallel
Strand 6	F	109	118	anti-parallel
Strand 7	F	121	126	anti-parallel
Strand 8	F	133	135	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	186	193	first strand
Strand 2	F	198	208	anti-parallel
Strand 3	F	241	250	anti-parallel
Strand 4	F	228	230	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	186	193	first strand
Strand 2	F	198	208	anti-parallel
Strand 3	F	241	250	anti-parallel
Strand 4	F	234	235	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	222	223	first strand
Strand 2	F	214	219	anti-parallel
Strand 3	F	257	262	anti-parallel
Strand 4	F	270	272	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	11	first strand
Strand 2	G	21	30	anti-parallel
Strand 3	G	62	70	anti-parallel
Strand 4	G	50	51	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	11	first strand
Strand 2	G	21	30	anti-parallel
Strand 3	G	62	70	anti-parallel
Strand 4	G	55	56	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	45	first strand
Strand 2	G	36	41	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	91	94	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	4	first strand
Strand 2	I	18	24	anti-parallel
Strand 3	I	72	77	anti-parallel
Strand 4	I	62	67	anti-parallel
Strand 5	I	54	57	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	110	115	parallel
Strand 3	I	87	93	anti-parallel
Strand 4	I	31	37	anti-parallel
Strand 5	I	44	49	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	110	115	parallel
Strand 3	I	87	93	anti-parallel
Strand 4	I	105	106	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	6	first strand
Strand 2	J	23	25	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	112	116	parallel
Strand 3	J	88	95	anti-parallel
Strand 4	J	31	37	anti-parallel
Strand 5	J	44	51	anti-parallel
Strand 6	J	54	57	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	112	116	parallel
Strand 3	J	88	95	anti-parallel
Strand 4	J	107	108	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	20	21	first strand
Strand 2	J	77	79	anti-parallel
Strand 3	J	65	67	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	4	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	72	77	anti-parallel
Strand 4	D	62	67	anti-parallel
Strand 5	D	54	57	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	110	114	parallel
Strand 3	D	87	93	anti-parallel
Strand 4	D	31	37	anti-parallel
Strand 5	D	44	49	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	110	114	parallel
Strand 3	D	87	93	anti-parallel
Strand 4	D	105	106	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	6	first strand
Strand 2	E	23	25	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	112	115	parallel
Strand 3	E	88	95	anti-parallel
Strand 4	E	31	38	anti-parallel
Strand 5	E	42	51	anti-parallel
Strand 6	E	54	57	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	112	115	parallel
Strand 3	E	88	95	anti-parallel
Strand 4	E	107	108	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	67	first strand
Strand 2	E	77	79	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UZ1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UZ1