Analysis of interatomic Contacts of Structural Units in PDB entry:
6UZK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UZK entry

There are 2 chains in PDB entry 6UZK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 419MET 730
B
 MET 1ARG 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6UZK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
438 442Right-handed 310
Helix 2
AA2
A
443 450Right-handed alpha
Helix 3
AA3
A
454 459Right-handed alpha
Helix 4
AA4
A
479 486Right-handed alpha
Helix 5
AA5
A
486 495Right-handed alpha
Helix 6
AA6
A
515 521Right-handed alpha
Helix 7
AA7
A
524 542Right-handed alpha
Helix 8
AA8
A
547 564Right-handed alpha
Helix 9
AA9
A
567 572Right-handed alpha
Helix 10
AB1
A
577 582Right-handed alpha
Helix 11
AB2
A
593 596Right-handed 310
Helix 12
AB3
A
597 611Right-handed alpha
Helix 13
AB4
A
617 630Right-handed alpha
Helix 14
AB5
A
714 728Right-handed alpha
Helix 15
AB6
B
15 26Right-handed alpha
Helix 16
AB7
B
68 75Right-handed alpha
Helix 17
AB8
B
86 92Right-handed alpha
Helix 18
AB9
B
92 105Right-handed alpha
Helix 19
AC1
B
127 138Right-handed alpha
Helix 20
AC2
B
153 166Right-handed alpha
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There are 3 sheets in PDB entry 6UZK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 473first strand
Strand 2
A
461 467anti-parallel
Strand 3
A
505 510anti-parallel
Strand 4
A
420 425parallel
Strand 5
A
431 436anti-parallel
Strand 6
B
37 46anti-parallel
Strand 7
B
49 58anti-parallel
Strand 8
B
2 9parallel
Strand 9
B
77 83parallel
Strand 10
B
111 116parallel
Strand 11
B
142 145parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
638 645first strand
Strand 2
A
655 662anti-parallel
Strand 3
A
666 671anti-parallel
Strand 4
A
677 682anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
687 690first strand
Strand 2
A
696 701anti-parallel
Strand 3
A
706 711anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il