Analysis of interatomic Contacts of Structural Units in PDB entry:
6V00

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V00 entry

There are 12 chains in PDB entry 6V00 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 104	LYS 569
B	THR 6	LYS 149
C	ARG 53	ARG 99
D	THR 104	LYS 569
E	THR 6	LYS 149
F	ARG 53	ARG 99
G	THR 104	LYS 569
H	THR 6	LYS 149
I	ARG 53	ARG 99
J	THR 104	LYS 569
K	THR 6	LYS 149
L	ARG 53	ARG 99

There are120 helices in PDB entry 6V00. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	104	115	Right-handed alpha
Helix 2	AA2	A	120	142	Right-handed alpha
Helix 3	AA3	A	143	145	Right-handed 310
Helix 4	AA4	A	148	152	Right-handed 310
Helix 5	AA5	A	159	178	Right-handed alpha
Helix 6	AA6	A	185	194	Right-handed alpha
Helix 7	AA7	A	196	216	Right-handed alpha
Helix 8	AA8	A	223	237	Right-handed alpha
Helix 9	AA9	A	238	241	Right-handed 310
Helix 10	AB1	A	242	244	Right-handed 310
Helix 11	AB2	A	245	258	Right-handed alpha
Helix 12	AB3	A	258	284	Right-handed alpha
Helix 13	AB4	A	298	311	Right-handed alpha
Helix 14	AB5	A	322	358	Right-handed alpha
Helix 15	AB6	A	363	366	Right-handed 310
Helix 16	AB7	A	367	385	Right-handed alpha
Helix 17	AB8	A	390	394	Right-handed 310
Helix 18	AB9	A	509	532	Right-handed alpha
Helix 19	AC1	A	537	564	Right-handed alpha
Helix 20	AC2	B	7	22	Right-handed alpha
Helix 21	AC3	B	29	40	Right-handed alpha
Helix 22	AC4	B	45	54	Right-handed alpha
Helix 23	AC5	B	65	75	Right-handed alpha
Helix 24	AC6	B	80	91	Right-handed alpha
Helix 25	AC7	B	92	98	Right-handed 310
Helix 26	AC8	B	103	111	Right-handed alpha
Helix 27	AC9	B	118	129	Right-handed alpha
Helix 28	AD1	B	139	149	Right-handed alpha
Helix 29	AD2	C	56	81	Right-handed alpha
Helix 30	AD3	C	90	99	Right-handed alpha
Helix 31	AD4	D	105	115	Right-handed alpha
Helix 32	AD5	D	120	142	Right-handed alpha
Helix 33	AD6	D	143	145	Right-handed 310
Helix 34	AD7	D	148	152	Right-handed 310
Helix 35	AD8	D	159	178	Right-handed alpha
Helix 36	AD9	D	185	194	Right-handed alpha
Helix 37	AE1	D	196	216	Right-handed alpha
Helix 38	AE2	D	223	237	Right-handed alpha
Helix 39	AE3	D	238	241	Right-handed 310
Helix 40	AE4	D	242	244	Right-handed 310
Helix 41	AE5	D	245	258	Right-handed alpha
Helix 42	AE6	D	258	284	Right-handed alpha
Helix 43	AE7	D	298	311	Right-handed alpha
Helix 44	AE8	D	322	358	Right-handed alpha
Helix 45	AE9	D	363	366	Right-handed 310
Helix 46	AF1	D	367	385	Right-handed alpha
Helix 47	AF2	D	390	394	Right-handed 310
Helix 48	AF3	D	509	532	Right-handed alpha
Helix 49	AF4	D	537	564	Right-handed alpha
Helix 50	AF5	E	7	22	Right-handed alpha
Helix 51	AF6	E	29	40	Right-handed alpha
Helix 52	AF7	E	45	54	Right-handed alpha
Helix 53	AF8	E	65	75	Right-handed alpha
Helix 54	AF9	E	80	91	Right-handed alpha
Helix 55	AG1	E	92	98	Right-handed 310
Helix 56	AG2	E	103	111	Right-handed alpha
Helix 57	AG3	E	118	129	Right-handed alpha
Helix 58	AG4	E	139	149	Right-handed alpha
Helix 59	AG5	F	56	81	Right-handed alpha
Helix 60	AG6	F	90	99	Right-handed alpha
Helix 61	AG7	G	105	115	Right-handed alpha
Helix 62	AG8	G	120	142	Right-handed alpha
Helix 63	AG9	G	143	145	Right-handed 310
Helix 64	AH1	G	148	152	Right-handed 310
Helix 65	AH2	G	159	178	Right-handed alpha
Helix 66	AH3	G	185	194	Right-handed alpha
Helix 67	AH4	G	196	216	Right-handed alpha
Helix 68	AH5	G	223	237	Right-handed alpha
Helix 69	AH6	G	238	241	Right-handed 310
Helix 70	AH7	G	242	244	Right-handed 310
Helix 71	AH8	G	245	258	Right-handed alpha
Helix 72	AH9	G	258	284	Right-handed alpha
Helix 73	AI1	G	298	311	Right-handed alpha
Helix 74	AI2	G	322	358	Right-handed alpha
Helix 75	AI3	G	363	366	Right-handed 310
Helix 76	AI4	G	367	385	Right-handed alpha
Helix 77	AI5	G	390	394	Right-handed 310
Helix 78	AI6	G	509	532	Right-handed alpha
Helix 79	AI7	G	537	564	Right-handed alpha
Helix 80	AI8	H	7	22	Right-handed alpha
Helix 81	AI9	H	29	40	Right-handed alpha
Helix 82	AJ1	H	45	54	Right-handed alpha
Helix 83	AJ2	H	65	75	Right-handed alpha
Helix 84	AJ3	H	80	91	Right-handed alpha
Helix 85	AJ4	H	92	98	Right-handed 310
Helix 86	AJ5	H	103	111	Right-handed alpha
Helix 87	AJ6	H	118	129	Right-handed alpha
Helix 88	AJ7	H	139	149	Right-handed alpha
Helix 89	AJ8	I	56	81	Right-handed alpha
Helix 90	AJ9	I	90	99	Right-handed alpha
Helix 91	AK1	J	105	115	Right-handed alpha
Helix 92	AK2	J	120	142	Right-handed alpha
Helix 93	AK3	J	143	145	Right-handed 310
Helix 94	AK4	J	148	152	Right-handed 310
Helix 95	AK5	J	159	178	Right-handed alpha
Helix 96	AK6	J	185	194	Right-handed alpha
Helix 97	AK7	J	196	216	Right-handed alpha
Helix 98	AK8	J	223	237	Right-handed alpha
Helix 99	AK9	J	238	241	Right-handed 310
Helix 100	AL1	J	242	244	Right-handed 310
Helix 101	AL2	J	245	258	Right-handed alpha
Helix 102	AL3	J	258	284	Right-handed alpha
Helix 103	AL4	J	298	311	Right-handed alpha
Helix 104	AL5	J	322	358	Right-handed alpha
Helix 105	AL6	J	363	366	Right-handed 310
Helix 106	AL7	J	367	385	Right-handed alpha
Helix 107	AL8	J	390	394	Right-handed 310
Helix 108	AL9	J	509	532	Right-handed alpha
Helix 109	AM1	J	537	564	Right-handed alpha
Helix 110	AM2	K	7	22	Right-handed alpha
Helix 111	AM3	K	29	40	Right-handed alpha
Helix 112	AM4	K	45	54	Right-handed alpha
Helix 113	AM5	K	65	75	Right-handed alpha
Helix 114	AM6	K	80	91	Right-handed alpha
Helix 115	AM7	K	92	98	Right-handed 310
Helix 116	AM8	K	103	111	Right-handed alpha
Helix 117	AM9	K	118	129	Right-handed alpha
Helix 118	AN1	K	139	149	Right-handed alpha
Helix 119	AN2	L	56	81	Right-handed alpha
Helix 120	AN3	L	90	99	Right-handed alpha

There are 4 sheets in PDB entry 6V00. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	B	136	138	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	102	first strand
Strand 2	E	136	138	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	100	102	first strand
Strand 2	H	136	138	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	100	102	first strand
Strand 2	K	136	138	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V00

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V00