Analysis of interatomic Contacts of Structural Units in PDB entry:
6V03

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V03 entry

There are 5 chains in PDB entry 6V03 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 11	ILE 317
B	PRO 11	ILE 317
C	PRO 11	ILE 317
D	PRO 11	ILE 317
E	PRO 11	ILE 317

There are 45 helices in PDB entry 6V03. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	62	Right-handed 310
Helix 2	AA2	A	63	68	Right-handed alpha
Helix 3	AA3	A	182	185	Right-handed 310
Helix 4	AA4	A	201	204	Right-handed 310
Helix 5	AA5	A	209	218	Right-handed alpha
Helix 6	AA6	A	219	224	Right-handed 310
Helix 7	AA7	A	227	232	Right-handed alpha
Helix 8	AA8	A	232	248	Right-handed alpha
Helix 9	AA9	A	260	285	Right-handed alpha
Helix 10	AB1	A	295	299	Right-handed 310
Helix 11	AB2	A	306	316	Right-handed alpha
Helix 12	AB3	B	63	69	Right-handed alpha
Helix 13	AB4	B	201	204	Right-handed 310
Helix 14	AB5	B	209	218	Right-handed alpha
Helix 15	AB6	B	219	224	Right-handed 310
Helix 16	AB7	B	227	248	Right-handed alpha
Helix 17	AB8	B	260	282	Right-handed alpha
Helix 18	AB9	B	308	317	Right-handed alpha
Helix 19	AC1	C	59	61	Right-handed 310
Helix 20	AC2	C	62	70	Right-handed alpha
Helix 21	AC3	C	153	157	Right-handed 310
Helix 22	AC4	C	176	179	Right-handed 310
Helix 23	AC5	C	209	218	Right-handed alpha
Helix 24	AC6	C	219	224	Right-handed 310
Helix 25	AC7	C	227	248	Right-handed alpha
Helix 26	AC8	C	260	286	Right-handed alpha
Helix 27	AC9	C	305	311	Right-handed alpha
Helix 28	AD1	D	62	70	Right-handed alpha
Helix 29	AD2	D	201	204	Right-handed 310
Helix 30	AD3	D	209	218	Right-handed alpha
Helix 31	AD4	D	219	224	Right-handed 310
Helix 32	AD5	D	232	248	Right-handed alpha
Helix 33	AD6	D	260	282	Right-handed alpha
Helix 34	AD7	D	302	308	Right-handed alpha
Helix 35	AD8	D	308	313	Right-handed alpha
Helix 36	AD9	E	62	70	Right-handed alpha
Helix 37	AE1	E	201	204	Right-handed 310
Helix 38	AE2	E	209	220	Right-handed alpha
Helix 39	AE3	E	221	224	Right-handed 310
Helix 40	AE4	E	227	232	Right-handed alpha
Helix 41	AE5	E	232	237	Right-handed alpha
Helix 42	AE6	E	238	243	Right-handed alpha
Helix 43	AE7	E	243	248	Right-handed alpha
Helix 44	AE8	E	260	283	Right-handed alpha
Helix 45	AE9	E	308	313	Right-handed alpha

There are 18 sheets in PDB entry 6V03. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	58	first strand
Strand 2	A	90	94	anti-parallel
Strand 3	A	99	111	anti-parallel
Strand 4	A	32	44	anti-parallel
Strand 5	A	12	27	anti-parallel
Strand 6	A	138	147	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	187	199	anti-parallel
Strand 4	A	160	162	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	187	199	anti-parallel
Strand 4	A	167	174	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	14	first strand
Strand 2	B	139	140	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	58	first strand
Strand 2	B	90	94	anti-parallel
Strand 3	B	99	111	anti-parallel
Strand 4	B	32	44	anti-parallel
Strand 5	B	17	27	anti-parallel
Strand 6	B	144	147	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	123	132	anti-parallel
Strand 3	B	187	199	anti-parallel
Strand 4	B	160	162	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	123	132	anti-parallel
Strand 3	B	187	199	anti-parallel
Strand 4	B	167	174	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	58	first strand
Strand 2	C	90	94	anti-parallel
Strand 3	C	99	111	anti-parallel
Strand 4	C	32	44	anti-parallel
Strand 5	C	12	27	anti-parallel
Strand 6	C	138	147	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	125	132	anti-parallel
Strand 3	C	187	199	anti-parallel
Strand 4	C	160	162	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	125	132	anti-parallel
Strand 3	C	187	199	anti-parallel
Strand 4	C	167	174	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	58	first strand
Strand 2	D	90	94	anti-parallel
Strand 3	D	99	111	anti-parallel
Strand 4	D	32	44	anti-parallel
Strand 5	D	13	27	anti-parallel
Strand 6	D	139	147	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	125	132	anti-parallel
Strand 3	D	191	199	anti-parallel
Strand 4	D	160	163	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	125	132	anti-parallel
Strand 3	D	191	199	anti-parallel
Strand 4	D	168	169	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	174	first strand
Strand 2	D	187	189	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	14	first strand
Strand 2	E	139	140	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	58	first strand
Strand 2	E	90	94	anti-parallel
Strand 3	E	99	111	anti-parallel
Strand 4	E	32	44	anti-parallel
Strand 5	E	18	27	anti-parallel
Strand 6	E	145	147	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	123	132	anti-parallel
Strand 3	E	190	199	anti-parallel
Strand 4	E	160	162	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	123	132	anti-parallel
Strand 3	E	190	199	anti-parallel
Strand 4	E	168	171	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V03

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V03