Analysis of interatomic Contacts of Structural Units in PDB entry:
6V05

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V05 entry

There are 6 chains in PDB entry 6V05 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 24	LYS 808
B	VAL 30	ARG 392
C	SER 29	LEU 209
D	PRO 31	SER 243
E	ARG 29	SER 111
F	ASN 459	LYS 808

There are 32 helices in PDB entry 6V05. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	46	Right-handed alpha
Helix 2	AA2	A	55	67	Right-handed alpha
Helix 3	AA3	A	68	70	Right-handed 310
Helix 4	AA4	A	106	118	Right-handed alpha
Helix 5	AA5	A	129	143	Right-handed alpha
Helix 6	AA6	A	189	196	Right-handed alpha
Helix 7	AA7	A	216	232	Right-handed alpha
Helix 8	AA8	A	281	288	Right-handed alpha
Helix 9	AA9	A	298	314	Right-handed alpha
Helix 10	AB1	A	361	369	Right-handed alpha
Helix 11	AB2	A	380	393	Right-handed alpha
Helix 12	AB3	A	542	552	Right-handed alpha
Helix 13	AB4	A	647	651	Right-handed 310
Helix 14	AB5	B	319	323	Right-handed 310
Helix 15	AB6	C	39	44	Right-handed alpha
Helix 16	AB7	C	76	80	Right-handed 310
Helix 17	AB8	C	115	128	Right-handed alpha
Helix 18	AB9	C	190	209	Right-handed alpha
Helix 19	AC1	D	32	45	Right-handed alpha
Helix 20	AC2	D	47	62	Right-handed alpha
Helix 21	AC3	D	67	83	Right-handed alpha
Helix 22	AC4	D	84	99	Right-handed alpha
Helix 23	AC5	D	104	121	Right-handed alpha
Helix 24	AC6	D	124	129	Right-handed alpha
Helix 25	AC7	D	137	154	Right-handed alpha
Helix 26	AC8	D	159	189	Right-handed alpha
Helix 27	AC9	D	190	205	Right-handed alpha
Helix 28	AD1	D	208	225	Right-handed alpha
Helix 29	AD2	D	229	241	Right-handed alpha
Helix 30	AD3	E	39	45	Right-handed alpha
Helix 31	AD4	E	51	60	Right-handed alpha
Helix 32	AD5	F	545	553	Right-handed alpha

There are 18 sheets in PDB entry 6V05. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	84	90	parallel
Strand 3	A	72	79	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	162	170	parallel
Strand 3	A	150	158	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	183	first strand
Strand 2	A	253	259	parallel
Strand 3	A	242	247	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	276	first strand
Strand 2	A	334	343	parallel
Strand 3	A	320	329	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	355	first strand
Strand 2	A	412	420	parallel
Strand 3	A	395	404	anti-parallel

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There are 30 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	805	first strand
Strand 2	A	782	788	anti-parallel
Strand 3	A	767	777	anti-parallel
Strand 4	A	733	745	anti-parallel
Strand 5	A	710	720	anti-parallel
Strand 6	A	628	640	anti-parallel
Strand 7	A	608	620	anti-parallel
Strand 8	A	591	600	anti-parallel
Strand 9	A	564	580	anti-parallel
Strand 10	A	523	537	anti-parallel
Strand 11	A	505	518	anti-parallel
Strand 12	A	484	494	anti-parallel
Strand 13	A	467	475	anti-parallel
Strand 14	A	455	462	anti-parallel
Strand 15	A	439	446	anti-parallel
Strand 16	A	424	432	anti-parallel
Strand 17	F	802	806	anti-parallel
Strand 18	F	782	792	anti-parallel
Strand 19	F	768	777	anti-parallel
Strand 20	F	733	745	anti-parallel
Strand 21	F	710	720	anti-parallel
Strand 22	F	628	639	anti-parallel
Strand 23	F	609	620	anti-parallel
Strand 24	F	590	600	anti-parallel
Strand 25	F	565	579	anti-parallel
Strand 26	F	523	536	anti-parallel
Strand 27	F	505	518	anti-parallel
Strand 28	F	489	495	anti-parallel
Strand 29	F	467	469	anti-parallel
Strand 30	F	460	462	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	71	75	anti-parallel
Strand 3	B	80	85	anti-parallel
Strand 4	B	94	96	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	121	125	anti-parallel
Strand 3	B	130	135	anti-parallel
Strand 4	B	142	146	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	165	anti-parallel
Strand 3	B	170	175	anti-parallel
Strand 4	B	184	186	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	203	first strand
Strand 2	B	206	209	anti-parallel
Strand 3	B	215	219	anti-parallel
Strand 4	B	227	231	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	257	260	anti-parallel
Strand 3	B	268	271	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	291	first strand
Strand 2	B	295	299	anti-parallel
Strand 3	B	305	309	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	333	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	345	349	anti-parallel
Strand 4	B	357	361	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	374	first strand
Strand 2	B	377	381	anti-parallel
Strand 3	B	387	388	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	100	first strand
Strand 2	C	103	108	anti-parallel
Strand 3	C	172	183	anti-parallel
Strand 4	C	157	167	anti-parallel
Strand 5	C	146	147	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	133	first strand
Strand 2	C	140	143	anti-parallel
Strand 3	C	157	167	anti-parallel
Strand 4	C	172	183	anti-parallel
Strand 5	C	186	187	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	35	first strand
Strand 2	E	72	80	anti-parallel
Strand 3	E	87	94	anti-parallel
Strand 4	E	103	107	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	654	655	first strand
Strand 2	F	666	668	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V05

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V05