Analysis of interatomic Contacts of Structural Units in PDB entry:
6V0B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V0B entry

There are 5 chains in PDB entry 6V0B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 11	VAL 316
B	PRO 11	VAL 316
C	PRO 11	VAL 316
D	PRO 11	VAL 316
E	PRO 11	VAL 316

There are 35 helices in PDB entry 6V0B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	67	Right-handed alpha
Helix 2	AA2	A	202	207	Right-handed alpha
Helix 3	AA3	A	211	220	Right-handed alpha
Helix 4	AA4	A	230	253	Right-handed alpha
Helix 5	AA5	A	261	264	Right-handed 310
Helix 6	AA6	A	265	285	Right-handed alpha
Helix 7	AA7	A	302	307	Right-handed alpha
Helix 8	AA8	B	62	67	Right-handed alpha
Helix 9	AA9	B	202	207	Right-handed alpha
Helix 10	AB1	B	211	220	Right-handed alpha
Helix 11	AB2	B	230	253	Right-handed alpha
Helix 12	AB3	B	261	264	Right-handed 310
Helix 13	AB4	B	265	285	Right-handed alpha
Helix 14	AB5	B	302	307	Right-handed alpha
Helix 15	AB6	C	62	67	Right-handed alpha
Helix 16	AB7	C	202	207	Right-handed alpha
Helix 17	AB8	C	211	220	Right-handed alpha
Helix 18	AB9	C	230	253	Right-handed alpha
Helix 19	AC1	C	261	264	Right-handed 310
Helix 20	AC2	C	265	285	Right-handed alpha
Helix 21	AC3	C	302	307	Right-handed alpha
Helix 22	AC4	D	62	67	Right-handed alpha
Helix 23	AC5	D	202	207	Right-handed alpha
Helix 24	AC6	D	211	220	Right-handed alpha
Helix 25	AC7	D	230	253	Right-handed alpha
Helix 26	AC8	D	261	264	Right-handed 310
Helix 27	AC9	D	265	285	Right-handed alpha
Helix 28	AD1	D	302	307	Right-handed alpha
Helix 29	AD2	E	62	67	Right-handed alpha
Helix 30	AD3	E	202	207	Right-handed alpha
Helix 31	AD4	E	211	220	Right-handed alpha
Helix 32	AD5	E	230	253	Right-handed alpha
Helix 33	AD6	E	261	264	Right-handed 310
Helix 34	AD7	E	265	285	Right-handed alpha
Helix 35	AD8	E	302	307	Right-handed alpha

There are 20 sheets in PDB entry 6V0B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	27	first strand
Strand 2	A	32	44	anti-parallel
Strand 3	A	99	111	anti-parallel
Strand 4	A	93	94	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	27	first strand
Strand 2	A	32	44	anti-parallel
Strand 3	A	14	18	anti-parallel
Strand 4	A	140	142	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	77	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	187	198	anti-parallel
Strand 4	A	166	167	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	77	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	187	198	anti-parallel
Strand 4	A	170	174	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	27	first strand
Strand 2	B	32	44	anti-parallel
Strand 3	B	99	111	anti-parallel
Strand 4	B	93	94	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	27	first strand
Strand 2	B	32	44	anti-parallel
Strand 3	B	14	18	anti-parallel
Strand 4	B	140	142	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	77	first strand
Strand 2	B	123	132	anti-parallel
Strand 3	B	187	198	anti-parallel
Strand 4	B	166	167	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	77	first strand
Strand 2	B	123	132	anti-parallel
Strand 3	B	187	198	anti-parallel
Strand 4	B	170	174	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	27	first strand
Strand 2	C	32	44	anti-parallel
Strand 3	C	99	111	anti-parallel
Strand 4	C	93	94	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	27	first strand
Strand 2	C	32	44	anti-parallel
Strand 3	C	14	18	anti-parallel
Strand 4	C	140	142	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	77	first strand
Strand 2	C	123	132	anti-parallel
Strand 3	C	187	198	anti-parallel
Strand 4	C	166	167	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	77	first strand
Strand 2	C	123	132	anti-parallel
Strand 3	C	187	198	anti-parallel
Strand 4	C	170	174	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	27	first strand
Strand 2	D	32	44	anti-parallel
Strand 3	D	99	111	anti-parallel
Strand 4	D	93	94	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	27	first strand
Strand 2	D	32	44	anti-parallel
Strand 3	D	14	18	anti-parallel
Strand 4	D	140	142	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	77	first strand
Strand 2	D	123	132	anti-parallel
Strand 3	D	187	198	anti-parallel
Strand 4	D	166	167	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	77	first strand
Strand 2	D	123	132	anti-parallel
Strand 3	D	187	198	anti-parallel
Strand 4	D	170	174	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	22	27	first strand
Strand 2	E	32	44	anti-parallel
Strand 3	E	99	111	anti-parallel
Strand 4	E	93	94	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	22	27	first strand
Strand 2	E	32	44	anti-parallel
Strand 3	E	14	18	anti-parallel
Strand 4	E	140	142	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	77	first strand
Strand 2	E	123	132	anti-parallel
Strand 3	E	187	198	anti-parallel
Strand 4	E	166	167	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	77	first strand
Strand 2	E	123	132	anti-parallel
Strand 3	E	187	198	anti-parallel
Strand 4	E	170	174	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V0B

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V0B