Analysis of interatomic Contacts of Structural Units in PDB entry:
6V0E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V0E entry

There are 6 chains in PDB entry 6V0E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 515	LYS 877
B	THR 515	LYS 877
C	THR 515	LYS 877
D	THR 515	LYS 877
E	THR 515	LYS 877
F	THR 515	LYS 877

There are 48 helices in PDB entry 6V0E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	560	564	Right-handed 310
Helix 2	AA2	A	594	600	Right-handed alpha
Helix 3	AA3	A	611	617	Right-handed alpha
Helix 4	AA4	A	626	632	Right-handed alpha
Helix 5	AA5	A	711	715	Right-handed 310
Helix 6	AA6	A	741	745	Right-handed 310
Helix 7	AA7	A	798	802	Right-handed 310
Helix 8	AA8	A	867	871	Right-handed 310
Helix 9	AA9	B	560	564	Right-handed 310
Helix 10	AB1	B	594	600	Right-handed alpha
Helix 11	AB2	B	611	617	Right-handed alpha
Helix 12	AB3	B	626	632	Right-handed alpha
Helix 13	AB4	B	711	715	Right-handed 310
Helix 14	AB5	B	741	745	Right-handed 310
Helix 15	AB6	B	798	802	Right-handed 310
Helix 16	AB7	B	867	871	Right-handed 310
Helix 17	AB8	C	560	564	Right-handed 310
Helix 18	AB9	C	594	600	Right-handed alpha
Helix 19	AC1	C	611	617	Right-handed alpha
Helix 20	AC2	C	626	632	Right-handed alpha
Helix 21	AC3	C	711	715	Right-handed 310
Helix 22	AC4	C	741	745	Right-handed 310
Helix 23	AC5	C	798	802	Right-handed 310
Helix 24	AC6	C	867	871	Right-handed 310
Helix 25	AC7	D	560	564	Right-handed 310
Helix 26	AC8	D	594	600	Right-handed alpha
Helix 27	AC9	D	611	617	Right-handed alpha
Helix 28	AD1	D	626	632	Right-handed alpha
Helix 29	AD2	D	711	715	Right-handed 310
Helix 30	AD3	D	741	745	Right-handed 310
Helix 31	AD4	D	798	802	Right-handed 310
Helix 32	AD5	D	867	871	Right-handed 310
Helix 33	AD6	E	560	564	Right-handed 310
Helix 34	AD7	E	594	600	Right-handed alpha
Helix 35	AD8	E	611	617	Right-handed alpha
Helix 36	AD9	E	626	632	Right-handed alpha
Helix 37	AE1	E	711	715	Right-handed 310
Helix 38	AE2	E	741	745	Right-handed 310
Helix 39	AE3	E	798	802	Right-handed 310
Helix 40	AE4	E	867	871	Right-handed 310
Helix 41	AE5	F	560	564	Right-handed 310
Helix 42	AE6	F	594	600	Right-handed alpha
Helix 43	AE7	F	611	617	Right-handed alpha
Helix 44	AE8	F	626	632	Right-handed alpha
Helix 45	AE9	F	711	715	Right-handed 310
Helix 46	AF1	F	741	745	Right-handed 310
Helix 47	AF2	F	798	802	Right-handed 310
Helix 48	AF3	F	867	871	Right-handed 310

There are 18 sheets in PDB entry 6V0E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	521	first strand
Strand 2	A	553	558	anti-parallel
Strand 3	A	539	547	anti-parallel
Strand 4	A	532	535	anti-parallel
Strand 5	A	603	607	parallel
Strand 6	A	571	575	anti-parallel
Strand 7	A	623	624	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	695	698	first strand
Strand 2	A	719	722	anti-parallel
Strand 3	A	652	655	parallel
Strand 4	A	658	669	anti-parallel
Strand 5	A	674	681	anti-parallel
Strand 6	A	635	641	anti-parallel
Strand 7	A	732	733	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	749	754	first strand
Strand 2	A	788	794	anti-parallel
Strand 3	A	771	781	anti-parallel
Strand 4	A	765	768	anti-parallel
Strand 5	A	838	841	parallel
Strand 6	A	807	810	anti-parallel
Strand 7	A	857	861	parallel
Strand 8	A	749	754	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	517	521	first strand
Strand 2	B	553	558	anti-parallel
Strand 3	B	539	547	anti-parallel
Strand 4	B	532	535	anti-parallel
Strand 5	B	603	607	parallel
Strand 6	B	571	575	anti-parallel
Strand 7	B	623	624	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	695	698	first strand
Strand 2	B	719	722	anti-parallel
Strand 3	B	652	655	parallel
Strand 4	B	658	669	anti-parallel
Strand 5	B	674	681	anti-parallel
Strand 6	B	635	641	anti-parallel
Strand 7	B	732	733	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	749	754	first strand
Strand 2	B	788	794	anti-parallel
Strand 3	B	771	781	anti-parallel
Strand 4	B	765	768	anti-parallel
Strand 5	B	838	841	parallel
Strand 6	B	807	810	anti-parallel
Strand 7	B	857	861	parallel
Strand 8	B	749	754	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	517	521	first strand
Strand 2	C	553	558	anti-parallel
Strand 3	C	539	547	anti-parallel
Strand 4	C	532	535	anti-parallel
Strand 5	C	603	607	parallel
Strand 6	C	571	575	anti-parallel
Strand 7	C	623	624	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	695	698	first strand
Strand 2	C	719	722	anti-parallel
Strand 3	C	652	655	parallel
Strand 4	C	658	669	anti-parallel
Strand 5	C	674	681	anti-parallel
Strand 6	C	635	641	anti-parallel
Strand 7	C	732	733	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	749	754	first strand
Strand 2	C	788	794	anti-parallel
Strand 3	C	771	781	anti-parallel
Strand 4	C	765	768	anti-parallel
Strand 5	C	838	841	parallel
Strand 6	C	807	810	anti-parallel
Strand 7	C	857	861	parallel
Strand 8	C	749	754	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	517	521	first strand
Strand 2	D	553	558	anti-parallel
Strand 3	D	539	547	anti-parallel
Strand 4	D	532	535	anti-parallel
Strand 5	D	603	607	parallel
Strand 6	D	571	575	anti-parallel
Strand 7	D	623	624	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	695	698	first strand
Strand 2	D	719	722	anti-parallel
Strand 3	D	652	655	parallel
Strand 4	D	658	669	anti-parallel
Strand 5	D	674	681	anti-parallel
Strand 6	D	635	641	anti-parallel
Strand 7	D	732	733	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	749	754	first strand
Strand 2	D	788	794	anti-parallel
Strand 3	D	771	781	anti-parallel
Strand 4	D	765	768	anti-parallel
Strand 5	D	838	841	parallel
Strand 6	D	807	810	anti-parallel
Strand 7	D	857	861	parallel
Strand 8	D	749	754	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	517	521	first strand
Strand 2	E	553	558	anti-parallel
Strand 3	E	539	547	anti-parallel
Strand 4	E	532	535	anti-parallel
Strand 5	E	603	607	parallel
Strand 6	E	571	575	anti-parallel
Strand 7	E	623	624	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	695	698	first strand
Strand 2	E	719	722	anti-parallel
Strand 3	E	652	655	parallel
Strand 4	E	658	669	anti-parallel
Strand 5	E	674	681	anti-parallel
Strand 6	E	635	641	anti-parallel
Strand 7	E	732	733	parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	749	754	first strand
Strand 2	E	788	794	anti-parallel
Strand 3	E	771	781	anti-parallel
Strand 4	E	765	768	anti-parallel
Strand 5	E	838	841	parallel
Strand 6	E	807	810	anti-parallel
Strand 7	E	857	861	parallel
Strand 8	E	749	754	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	517	521	first strand
Strand 2	F	553	558	anti-parallel
Strand 3	F	539	547	anti-parallel
Strand 4	F	532	535	anti-parallel
Strand 5	F	603	607	parallel
Strand 6	F	571	575	anti-parallel
Strand 7	F	623	624	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	695	698	first strand
Strand 2	F	719	722	anti-parallel
Strand 3	F	652	655	parallel
Strand 4	F	658	669	anti-parallel
Strand 5	F	674	681	anti-parallel
Strand 6	F	635	641	anti-parallel
Strand 7	F	732	733	parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	749	754	first strand
Strand 2	F	788	794	anti-parallel
Strand 3	F	771	781	anti-parallel
Strand 4	F	765	768	anti-parallel
Strand 5	F	838	841	parallel
Strand 6	F	807	810	anti-parallel
Strand 7	F	857	861	parallel
Strand 8	F	749	754	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V0E

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V0E