Analysis of interatomic Contacts of Structural Units in PDB entry:
6V0F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V0F entry

There are 6 chains in PDB entry 6V0F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 160	SER 510
B	ASP 160	SER 510
C	ASP 160	SER 510
D	ASP 160	SER 510
E	ASP 160	SER 510
F	ASP 160	SER 510

There are 54 helices in PDB entry 6V0F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	209	214	Right-handed 310
Helix 2	AA2	A	243	249	Right-handed alpha
Helix 3	AA3	A	274	278	Right-handed 310
Helix 4	AA4	A	330	334	Right-handed 310
Helix 5	AA5	A	354	361	Right-handed alpha
Helix 6	AA6	A	381	386	Right-handed alpha
Helix 7	AA7	A	438	445	Right-handed alpha
Helix 8	AA8	A	472	479	Right-handed alpha
Helix 9	AA9	A	500	506	Right-handed alpha
Helix 10	AB1	B	209	214	Right-handed 310
Helix 11	AB2	B	243	249	Right-handed alpha
Helix 12	AB3	B	274	278	Right-handed 310
Helix 13	AB4	B	330	334	Right-handed 310
Helix 14	AB5	B	354	361	Right-handed alpha
Helix 15	AB6	B	381	386	Right-handed alpha
Helix 16	AB7	B	438	445	Right-handed alpha
Helix 17	AB8	B	472	479	Right-handed alpha
Helix 18	AB9	B	500	506	Right-handed alpha
Helix 19	AC1	C	209	214	Right-handed 310
Helix 20	AC2	C	243	249	Right-handed alpha
Helix 21	AC3	C	274	278	Right-handed 310
Helix 22	AC4	C	330	334	Right-handed 310
Helix 23	AC5	C	354	361	Right-handed alpha
Helix 24	AC6	C	381	386	Right-handed alpha
Helix 25	AC7	C	438	445	Right-handed alpha
Helix 26	AC8	C	472	479	Right-handed alpha
Helix 27	AC9	C	500	506	Right-handed alpha
Helix 28	AD1	D	209	214	Right-handed 310
Helix 29	AD2	D	243	249	Right-handed alpha
Helix 30	AD3	D	274	278	Right-handed 310
Helix 31	AD4	D	330	334	Right-handed 310
Helix 32	AD5	D	354	361	Right-handed alpha
Helix 33	AD6	D	381	386	Right-handed alpha
Helix 34	AD7	D	438	445	Right-handed alpha
Helix 35	AD8	D	472	479	Right-handed alpha
Helix 36	AD9	D	500	506	Right-handed alpha
Helix 37	AE1	E	209	214	Right-handed 310
Helix 38	AE2	E	243	249	Right-handed alpha
Helix 39	AE3	E	274	278	Right-handed 310
Helix 40	AE4	E	330	334	Right-handed 310
Helix 41	AE5	E	354	361	Right-handed alpha
Helix 42	AE6	E	381	386	Right-handed alpha
Helix 43	AE7	E	438	445	Right-handed alpha
Helix 44	AE8	E	472	479	Right-handed alpha
Helix 45	AE9	E	500	506	Right-handed alpha
Helix 46	AF1	F	209	214	Right-handed 310
Helix 47	AF2	F	243	249	Right-handed alpha
Helix 48	AF3	F	274	278	Right-handed 310
Helix 49	AF4	F	330	334	Right-handed 310
Helix 50	AF5	F	354	361	Right-handed alpha
Helix 51	AF6	F	381	386	Right-handed alpha
Helix 52	AF7	F	438	445	Right-handed alpha
Helix 53	AF8	F	472	479	Right-handed alpha
Helix 54	AF9	F	500	506	Right-handed alpha

There are 30 sheets in PDB entry 6V0F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	167	first strand
Strand 2	A	201	207	anti-parallel
Strand 3	A	184	194	anti-parallel
Strand 4	A	178	181	anti-parallel
Strand 5	A	250	253	parallel
Strand 6	A	221	223	anti-parallel
Strand 7	A	267	271	parallel
Strand 8	A	161	167	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	230	first strand
Strand 2	B	237	240	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	240	first strand
Strand 2	F	227	230	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	344	first strand
Strand 2	A	363	367	anti-parallel
Strand 3	A	299	302	parallel
Strand 4	A	305	316	anti-parallel
Strand 5	A	320	327	anti-parallel
Strand 6	A	281	286	anti-parallel
Strand 7	A	376	378	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	449	453	first strand
Strand 2	A	481	485	anti-parallel
Strand 3	A	410	413	parallel
Strand 4	A	416	426	anti-parallel
Strand 5	A	431	437	anti-parallel
Strand 6	A	393	399	anti-parallel
Strand 7	A	494	496	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	460	first strand
Strand 2	A	467	468	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	167	first strand
Strand 2	B	201	207	anti-parallel
Strand 3	B	184	194	anti-parallel
Strand 4	B	178	181	anti-parallel
Strand 5	B	250	253	parallel
Strand 6	B	221	223	anti-parallel
Strand 7	B	267	271	parallel
Strand 8	B	161	167	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	230	first strand
Strand 2	C	237	240	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	344	first strand
Strand 2	B	363	367	anti-parallel
Strand 3	B	299	302	parallel
Strand 4	B	305	316	anti-parallel
Strand 5	B	320	327	anti-parallel
Strand 6	B	281	286	anti-parallel
Strand 7	B	376	378	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	449	453	first strand
Strand 2	B	481	485	anti-parallel
Strand 3	B	410	413	parallel
Strand 4	B	416	426	anti-parallel
Strand 5	B	431	437	anti-parallel
Strand 6	B	393	399	anti-parallel
Strand 7	B	494	496	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	460	first strand
Strand 2	B	467	468	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	167	first strand
Strand 2	C	201	207	anti-parallel
Strand 3	C	184	194	anti-parallel
Strand 4	C	178	181	anti-parallel
Strand 5	C	250	253	parallel
Strand 6	C	221	223	anti-parallel
Strand 7	C	267	271	parallel
Strand 8	C	161	167	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	230	first strand
Strand 2	D	237	240	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	344	first strand
Strand 2	C	363	367	anti-parallel
Strand 3	C	299	302	parallel
Strand 4	C	305	316	anti-parallel
Strand 5	C	320	327	anti-parallel
Strand 6	C	281	286	anti-parallel
Strand 7	C	376	378	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	449	453	first strand
Strand 2	C	481	485	anti-parallel
Strand 3	C	410	413	parallel
Strand 4	C	416	426	anti-parallel
Strand 5	C	431	437	anti-parallel
Strand 6	C	393	399	anti-parallel
Strand 7	C	494	496	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	459	460	first strand
Strand 2	C	467	468	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	167	first strand
Strand 2	D	201	207	anti-parallel
Strand 3	D	184	194	anti-parallel
Strand 4	D	178	181	anti-parallel
Strand 5	D	250	253	parallel
Strand 6	D	221	223	anti-parallel
Strand 7	D	267	271	parallel
Strand 8	D	161	167	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	230	first strand
Strand 2	E	237	240	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	340	344	first strand
Strand 2	D	363	367	anti-parallel
Strand 3	D	299	302	parallel
Strand 4	D	305	316	anti-parallel
Strand 5	D	320	327	anti-parallel
Strand 6	D	281	286	anti-parallel
Strand 7	D	376	378	parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	449	453	first strand
Strand 2	D	481	485	anti-parallel
Strand 3	D	410	413	parallel
Strand 4	D	416	426	anti-parallel
Strand 5	D	431	437	anti-parallel
Strand 6	D	393	399	anti-parallel
Strand 7	D	494	496	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	459	460	first strand
Strand 2	D	467	468	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	167	first strand
Strand 2	E	201	207	anti-parallel
Strand 3	E	184	194	anti-parallel
Strand 4	E	178	181	anti-parallel
Strand 5	E	250	253	parallel
Strand 6	E	221	223	anti-parallel
Strand 7	E	267	271	parallel
Strand 8	E	161	167	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	227	230	first strand
Strand 2	F	237	240	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	340	344	first strand
Strand 2	E	363	367	anti-parallel
Strand 3	E	299	302	parallel
Strand 4	E	305	316	anti-parallel
Strand 5	E	320	327	anti-parallel
Strand 6	E	281	286	anti-parallel
Strand 7	E	376	378	parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	449	453	first strand
Strand 2	E	481	485	anti-parallel
Strand 3	E	410	413	parallel
Strand 4	E	416	426	anti-parallel
Strand 5	E	431	437	anti-parallel
Strand 6	E	393	399	anti-parallel
Strand 7	E	494	496	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	459	460	first strand
Strand 2	E	467	468	anti-parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	161	167	first strand
Strand 2	F	201	207	anti-parallel
Strand 3	F	184	194	anti-parallel
Strand 4	F	178	181	anti-parallel
Strand 5	F	250	253	parallel
Strand 6	F	221	223	anti-parallel
Strand 7	F	267	271	parallel
Strand 8	F	161	167	parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	340	344	first strand
Strand 2	F	363	367	anti-parallel
Strand 3	F	299	302	parallel
Strand 4	F	305	316	anti-parallel
Strand 5	F	320	327	anti-parallel
Strand 6	F	281	286	anti-parallel
Strand 7	F	376	378	parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	449	453	first strand
Strand 2	F	481	485	anti-parallel
Strand 3	F	410	413	parallel
Strand 4	F	416	426	anti-parallel
Strand 5	F	431	437	anti-parallel
Strand 6	F	393	399	anti-parallel
Strand 7	F	494	496	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	459	460	first strand
Strand 2	F	467	468	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V0F

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V0F