Analysis of interatomic Contacts of Structural Units in PDB entry:
6V0J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V0J entry

There are 6 chains in PDB entry 6V0J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 46	VAL 380
B	GLY 46	VAL 380
C	GLY 46	VAL 380
D	GLY 46	VAL 380
E	GLY 46	VAL 380
F	GLY 46	VAL 380

There are 40 helices in PDB entry 6V0J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	95	102	Right-handed alpha
Helix 2	AA2	A	122	128	Right-handed alpha
Helix 3	AA3	A	209	212	Right-handed 310
Helix 4	AA4	A	242	249	Right-handed alpha
Helix 5	AA5	A	274	278	Right-handed 310
Helix 6	AA6	A	331	335	Right-handed 310
Helix 7	AA7	A	354	361	Right-handed alpha
Helix 8	AA8	B	95	102	Right-handed alpha
Helix 9	AA9	B	122	128	Right-handed alpha
Helix 10	AB1	B	209	212	Right-handed 310
Helix 11	AB2	B	242	249	Right-handed alpha
Helix 12	AB3	B	274	278	Right-handed 310
Helix 13	AB4	B	331	335	Right-handed 310
Helix 14	AB5	B	354	361	Right-handed alpha
Helix 15	AB6	C	95	102	Right-handed alpha
Helix 16	AB7	C	122	128	Right-handed alpha
Helix 17	AB8	C	243	249	Right-handed alpha
Helix 18	AB9	C	274	278	Right-handed 310
Helix 19	AC1	C	354	361	Right-handed alpha
Helix 20	AC2	D	95	102	Right-handed alpha
Helix 21	AC3	D	122	128	Right-handed alpha
Helix 22	AC4	D	209	212	Right-handed 310
Helix 23	AC5	D	242	249	Right-handed alpha
Helix 24	AC6	D	274	278	Right-handed 310
Helix 25	AC7	D	331	335	Right-handed 310
Helix 26	AC8	D	354	361	Right-handed alpha
Helix 27	AC9	E	95	102	Right-handed alpha
Helix 28	AD1	E	122	128	Right-handed alpha
Helix 29	AD2	E	209	212	Right-handed 310
Helix 30	AD3	E	242	249	Right-handed alpha
Helix 31	AD4	E	274	278	Right-handed 310
Helix 32	AD5	E	331	335	Right-handed 310
Helix 33	AD6	E	354	361	Right-handed alpha
Helix 34	AD7	F	95	102	Right-handed alpha
Helix 35	AD8	F	122	128	Right-handed alpha
Helix 36	AD9	F	209	212	Right-handed 310
Helix 37	AE1	F	242	249	Right-handed alpha
Helix 38	AE2	F	274	278	Right-handed 310
Helix 39	AE3	F	331	335	Right-handed 310
Helix 40	AE4	F	354	361	Right-handed alpha

There are 18 sheets in PDB entry 6V0J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	111	first strand
Strand 2	A	131	135	anti-parallel
Strand 3	A	65	68	parallel
Strand 4	A	71	82	anti-parallel
Strand 5	A	87	94	anti-parallel
Strand 6	A	49	53	anti-parallel
Strand 7	A	144	146	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	167	first strand
Strand 2	A	201	207	anti-parallel
Strand 3	A	184	193	anti-parallel
Strand 4	A	178	181	anti-parallel
Strand 5	A	250	254	parallel
Strand 6	A	220	224	anti-parallel
Strand 7	A	270	271	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	344	first strand
Strand 2	A	363	367	anti-parallel
Strand 3	A	299	302	parallel
Strand 4	A	305	316	anti-parallel
Strand 5	A	320	326	anti-parallel
Strand 6	A	282	286	anti-parallel
Strand 7	A	376	378	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	111	first strand
Strand 2	B	131	135	anti-parallel
Strand 3	B	65	68	parallel
Strand 4	B	71	82	anti-parallel
Strand 5	B	87	94	anti-parallel
Strand 6	B	49	53	anti-parallel
Strand 7	B	144	146	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	167	first strand
Strand 2	B	201	207	anti-parallel
Strand 3	B	184	193	anti-parallel
Strand 4	B	178	181	anti-parallel
Strand 5	B	250	254	parallel
Strand 6	B	220	224	anti-parallel
Strand 7	B	270	271	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	344	first strand
Strand 2	B	363	367	anti-parallel
Strand 3	B	299	302	parallel
Strand 4	B	305	316	anti-parallel
Strand 5	B	320	326	anti-parallel
Strand 6	B	282	286	anti-parallel
Strand 7	B	376	378	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	111	first strand
Strand 2	C	131	135	anti-parallel
Strand 3	C	65	68	parallel
Strand 4	C	71	82	anti-parallel
Strand 5	C	87	94	anti-parallel
Strand 6	C	49	53	anti-parallel
Strand 7	C	144	146	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	167	first strand
Strand 2	C	201	207	anti-parallel
Strand 3	C	184	193	anti-parallel
Strand 4	C	178	181	anti-parallel
Strand 5	C	250	254	parallel
Strand 6	C	220	224	anti-parallel
Strand 7	C	270	271	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	344	first strand
Strand 2	C	363	367	anti-parallel
Strand 3	C	299	302	parallel
Strand 4	C	305	316	anti-parallel
Strand 5	C	320	326	anti-parallel
Strand 6	C	282	286	anti-parallel
Strand 7	C	376	378	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	111	first strand
Strand 2	D	131	135	anti-parallel
Strand 3	D	65	68	parallel
Strand 4	D	71	82	anti-parallel
Strand 5	D	87	94	anti-parallel
Strand 6	D	49	53	anti-parallel
Strand 7	D	144	146	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	167	first strand
Strand 2	D	201	207	anti-parallel
Strand 3	D	184	193	anti-parallel
Strand 4	D	178	181	anti-parallel
Strand 5	D	250	254	parallel
Strand 6	D	220	224	anti-parallel
Strand 7	D	270	271	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	340	344	first strand
Strand 2	D	363	367	anti-parallel
Strand 3	D	299	302	parallel
Strand 4	D	305	316	anti-parallel
Strand 5	D	320	326	anti-parallel
Strand 6	D	282	286	anti-parallel
Strand 7	D	376	378	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	107	111	first strand
Strand 2	E	131	135	anti-parallel
Strand 3	E	65	68	parallel
Strand 4	E	71	82	anti-parallel
Strand 5	E	87	94	anti-parallel
Strand 6	E	49	53	anti-parallel
Strand 7	E	144	146	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	167	first strand
Strand 2	E	201	207	anti-parallel
Strand 3	E	184	193	anti-parallel
Strand 4	E	178	181	anti-parallel
Strand 5	E	250	254	parallel
Strand 6	E	220	224	anti-parallel
Strand 7	E	270	271	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	340	344	first strand
Strand 2	E	363	367	anti-parallel
Strand 3	E	299	302	parallel
Strand 4	E	305	316	anti-parallel
Strand 5	E	320	326	anti-parallel
Strand 6	E	282	286	anti-parallel
Strand 7	E	376	378	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	107	111	first strand
Strand 2	F	131	135	anti-parallel
Strand 3	F	65	68	parallel
Strand 4	F	71	82	anti-parallel
Strand 5	F	87	94	anti-parallel
Strand 6	F	49	53	anti-parallel
Strand 7	F	144	146	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	161	167	first strand
Strand 2	F	201	207	anti-parallel
Strand 3	F	184	193	anti-parallel
Strand 4	F	178	181	anti-parallel
Strand 5	F	250	254	parallel
Strand 6	F	220	224	anti-parallel
Strand 7	F	270	271	parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	340	344	first strand
Strand 2	F	363	367	anti-parallel
Strand 3	F	299	302	parallel
Strand 4	F	305	316	anti-parallel
Strand 5	F	320	326	anti-parallel
Strand 6	F	282	286	anti-parallel
Strand 7	F	376	378	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V0J

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V0J