Analysis of interatomic Contacts of Structural Units in PDB entry:
6V0K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V0K entry

There are 2 chains in PDB entry 6V0K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 660LEU 961
B
 SER 660LEU 961
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 6V0K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
668 676Right-handed alpha
Helix 2
AA2
A
676 684Right-handed alpha
Helix 3
AA3
A
689 703Right-handed alpha
Helix 4
AA4
A
705 731Right-handed alpha
Helix 5
AA5
A
741 747Right-handed alpha
Helix 6
AA6
A
747 767Right-handed alpha
Helix 7
AA7
A
768 770Right-handed 310
Helix 8
AA8
A
771 799Right-handed alpha
Helix 9
AA9
A
803 829Right-handed alpha
Helix 10
AB1
A
836 857Right-handed alpha
Helix 11
AB2
A
858 863Right-handed alpha
Helix 12
AB3
A
868 874Right-handed alpha
Helix 13
AB4
A
877 887Right-handed alpha
Helix 14
AB5
A
891 900Right-handed alpha
Helix 15
AB6
A
903 917Right-handed alpha
Helix 16
AB7
A
918 943Right-handed alpha
Helix 17
AB8
A
949 958Right-handed alpha
Helix 18
AB9
B
668 676Right-handed alpha
Helix 19
AC1
B
676 684Right-handed alpha
Helix 20
AC2
B
690 703Right-handed alpha
Helix 21
AC3
B
705 732Right-handed alpha
Helix 22
AC4
B
741 747Right-handed alpha
Helix 23
AC5
B
747 767Right-handed alpha
Helix 24
AC6
B
768 770Right-handed 310
Helix 25
AC7
B
773 799Right-handed alpha
Helix 26
AC8
B
803 830Right-handed alpha
Helix 27
AC9
B
836 857Right-handed alpha
Helix 28
AD1
B
868 874Right-handed alpha
Helix 29
AD2
B
877 887Right-handed alpha
Helix 30
AD3
B
891 900Right-handed alpha
Helix 31
AD4
B
903 917Right-handed alpha
Helix 32
AD5
B
918 943Right-handed alpha
Helix 33
AD6
B
949 960Right-handed alpha
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There are 2 sheets in PDB entry 6V0K. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
735 736first strand
Strand 2
A
739 740anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
735 736first strand
Strand 2
B
739 740anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il