Analysis of interatomic Contacts of Structural Units in PDB entry:
6V0T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V0T entry

There is 1 chain in PDB entry 6V0T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 10GLN 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6V0T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 19Right-handed alpha
Helix 2
AA2
A
78 96Right-handed alpha
Helix 3
AA3
A
98 112Right-handed alpha
Helix 4
AA4
A
133 152Right-handed alpha
Helix 5
AA5
A
160 183Right-handed alpha
Helix 6
AA6
A
186 199Right-handed alpha
Helix 7
AA7
A
247 257Right-handed alpha
Helix 8
AA8
A
259 263Right-handed 310
Helix 9
AA9
A
285 288Right-handed 310
Helix 10
AB1
A
290 299Right-handed alpha
Helix 11
AB2
A
346 351Right-handed alpha
Helix 12
AB3
A
354 367Right-handed alpha
Helix 13
AB4
A
406 417Right-handed alpha
Helix 14
AB5
A
428 434Right-handed alpha
Helix 15
AB6
A
436 444Right-handed alpha
Helix 16
AB7
A
455 463Right-handed alpha
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There are 4 sheets in PDB entry 6V0T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
38 46anti-parallel
Strand 3
A
447 454anti-parallel
Strand 4
A
339 345anti-parallel
Strand 5
A
222 228anti-parallel
Strand 6
A
234 238anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 121first strand
Strand 2
A
54 61anti-parallel
Strand 3
A
67 75anti-parallel
Strand 4
A
200 201anti-parallel
Strand 5
A
282 283anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 121first strand
Strand 2
A
54 61anti-parallel
Strand 3
A
67 75anti-parallel
Strand 4
A
203 209anti-parallel
Strand 5
A
212 218anti-parallel
Strand 6
A
329 334anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 268first strand
Strand 2
A
271 272anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il