Analysis of interatomic Contacts of Structural Units in PDB entry:
6V11

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V11 entry

There are 6 chains in PDB entry 6V11 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 253	ALA 775
B	ALA 253	ALA 775
C	ALA 253	ALA 775
D	ALA 253	ALA 775
E	ALA 253	ALA 775
F	ALA 253	ALA 775

There are125 helices in PDB entry 6V11. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	254	258	Right-handed 310
Helix 2	AA2	A	264	279	Right-handed alpha
Helix 3	AA3	A	289	301	Right-handed alpha
Helix 4	AA4	A	312	321	Right-handed alpha
Helix 5	AA5	A	327	344	Right-handed alpha
Helix 6	AA6	A	366	374	Right-handed alpha
Helix 7	AA7	A	404	414	Right-handed alpha
Helix 8	AA8	A	440	444	Right-handed 310
Helix 9	AA9	A	480	483	Right-handed 310
Helix 10	AB1	A	494	505	Right-handed alpha
Helix 11	AB2	A	506	512	Right-handed alpha
Helix 12	AB3	A	524	534	Right-handed alpha
Helix 13	AB4	A	541	562	Right-handed alpha
Helix 14	AB5	A	574	579	Right-handed alpha
Helix 15	AB6	A	632	647	Right-handed alpha
Helix 16	AB7	A	657	661	Right-handed alpha
Helix 17	AB8	A	680	694	Right-handed alpha
Helix 18	AB9	A	718	729	Right-handed alpha
Helix 19	AC1	A	739	747	Right-handed 310
Helix 20	AC2	A	751	755	Right-handed 310
Helix 21	AC3	A	762	767	Right-handed alpha
Helix 22	AC4	B	254	259	Right-handed alpha
Helix 23	AC5	B	264	280	Right-handed alpha
Helix 24	AC6	B	285	301	Right-handed alpha
Helix 25	AC7	B	312	321	Right-handed alpha
Helix 26	AC8	B	327	344	Right-handed alpha
Helix 27	AC9	B	361	374	Right-handed alpha
Helix 28	AD1	B	405	414	Right-handed alpha
Helix 29	AD2	B	438	443	Right-handed 310
Helix 30	AD3	B	453	453	Right-handed 310
Helix 31	AD4	B	455	458	Right-handed 310
Helix 32	AD5	B	480	483	Right-handed 310
Helix 33	AD6	B	494	505	Right-handed alpha
Helix 34	AD7	B	506	514	Right-handed alpha
Helix 35	AD8	B	524	535	Right-handed alpha
Helix 36	AD9	B	541	561	Right-handed alpha
Helix 37	AE1	B	631	648	Right-handed alpha
Helix 38	AE2	B	649	653	Right-handed 310
Helix 39	AE3	B	657	661	Right-handed alpha
Helix 40	AE4	B	681	694	Right-handed alpha
Helix 41	AE5	B	718	729	Right-handed alpha
Helix 42	AE6	B	739	741	Right-handed 310
Helix 43	AE7	B	751	755	Right-handed 310
Helix 44	AE8	B	762	768	Right-handed alpha
Helix 45	AE9	C	253	257	Right-handed 310
Helix 46	AF1	C	264	279	Right-handed alpha
Helix 47	AF2	C	285	296	Right-handed alpha
Helix 48	AF3	C	297	299	Right-handed 310
Helix 49	AF4	C	313	321	Right-handed alpha
Helix 50	AF5	C	328	344	Right-handed alpha
Helix 51	AF6	C	363	374	Right-handed alpha
Helix 52	AF7	C	404	414	Right-handed alpha
Helix 53	AF8	C	437	441	Right-handed alpha
Helix 54	AF9	C	478	483	Right-handed alpha
Helix 55	AG1	C	494	506	Right-handed alpha
Helix 56	AG2	C	524	532	Right-handed alpha
Helix 57	AG3	C	541	561	Right-handed alpha
Helix 58	AG4	C	574	579	Right-handed alpha
Helix 59	AG5	C	630	648	Right-handed alpha
Helix 60	AG6	C	657	661	Right-handed alpha
Helix 61	AG7	C	681	694	Right-handed alpha
Helix 62	AG8	C	718	729	Right-handed alpha
Helix 63	AG9	C	737	739	Right-handed 310
Helix 64	AH1	C	740	745	Right-handed alpha
Helix 65	AH2	D	254	260	Right-handed alpha
Helix 66	AH3	D	264	279	Right-handed alpha
Helix 67	AH4	D	285	301	Right-handed alpha
Helix 68	AH5	D	312	321	Right-handed alpha
Helix 69	AH6	D	328	344	Right-handed alpha
Helix 70	AH7	D	364	374	Right-handed alpha
Helix 71	AH8	D	405	414	Right-handed alpha
Helix 72	AH9	D	440	445	Right-handed alpha
Helix 73	AI1	D	446	450	Right-handed 310
Helix 74	AI2	D	478	483	Right-handed alpha
Helix 75	AI3	D	494	505	Right-handed alpha
Helix 76	AI4	D	506	512	Right-handed alpha
Helix 77	AI5	D	524	534	Right-handed alpha
Helix 78	AI6	D	541	558	Right-handed alpha
Helix 79	AI7	D	632	648	Right-handed alpha
Helix 80	AI8	D	657	661	Right-handed alpha
Helix 81	AI9	D	680	694	Right-handed alpha
Helix 82	AJ1	D	718	729	Right-handed alpha
Helix 83	AJ2	D	739	745	Right-handed 310
Helix 84	AJ3	D	748	755	Right-handed alpha
Helix 85	AJ4	D	763	768	Right-handed alpha
Helix 86	AJ5	E	254	261	Right-handed alpha
Helix 87	AJ6	E	264	279	Right-handed alpha
Helix 88	AJ7	E	286	300	Right-handed alpha
Helix 89	AJ8	E	328	344	Right-handed alpha
Helix 90	AJ9	E	364	374	Right-handed alpha
Helix 91	AK1	E	404	414	Right-handed alpha
Helix 92	AK2	E	440	445	Right-handed alpha
Helix 93	AK3	E	478	484	Right-handed alpha
Helix 94	AK4	E	494	505	Right-handed alpha
Helix 95	AK5	E	506	512	Right-handed alpha
Helix 96	AK6	E	524	535	Right-handed alpha
Helix 97	AK7	E	541	561	Right-handed alpha
Helix 98	AK8	E	631	647	Right-handed alpha
Helix 99	AK9	E	657	662	Right-handed alpha
Helix 100	AL1	E	680	694	Right-handed alpha
Helix 101	AL2	E	718	728	Right-handed alpha
Helix 102	AL3	E	741	745	Right-handed 310
Helix 103	AL4	E	748	755	Right-handed alpha
Helix 104	AL5	E	762	770	Right-handed alpha
Helix 105	AL6	F	254	260	Right-handed alpha
Helix 106	AL7	F	264	280	Right-handed alpha
Helix 107	AL8	F	285	301	Right-handed alpha
Helix 108	AL9	F	313	321	Right-handed alpha
Helix 109	AM1	F	327	344	Right-handed alpha
Helix 110	AM2	F	362	374	Right-handed alpha
Helix 111	AM3	F	404	414	Right-handed alpha
Helix 112	AM4	F	440	445	Right-handed alpha
Helix 113	AM5	F	478	484	Right-handed alpha
Helix 114	AM6	F	494	506	Right-handed alpha
Helix 115	AM7	F	506	512	Right-handed alpha
Helix 116	AM8	F	524	536	Right-handed alpha
Helix 117	AM9	F	541	561	Right-handed alpha
Helix 118	AN1	F	575	580	Right-handed alpha
Helix 119	AN2	F	634	647	Right-handed alpha
Helix 120	AN3	F	657	661	Right-handed alpha
Helix 121	AN4	F	681	694	Right-handed alpha
Helix 122	AN5	F	718	729	Right-handed alpha
Helix 123	AN6	F	740	745	Right-handed alpha
Helix 124	AN7	F	748	753	Right-handed alpha
Helix 125	AN8	F	762	770	Right-handed alpha

There are 26 sheets in PDB entry 6V11. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	381	first strand
Strand 2	A	419	423	parallel
Strand 3	A	467	472	parallel
Strand 4	A	351	355	parallel
Strand 5	A	485	489	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	523	first strand
Strand 2	A	568	570	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	597	598	first strand
Strand 2	A	613	619	anti-parallel
Strand 3	A	662	667	anti-parallel
Strand 4	A	624	627	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	601	602	first strand
Strand 2	A	609	610	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	703	first strand
Strand 2	A	733	737	parallel
Strand 3	A	756	760	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	706	707	first strand
Strand 2	A	713	714	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	381	first strand
Strand 2	B	419	423	parallel
Strand 3	B	467	472	parallel
Strand 4	B	351	355	parallel
Strand 5	B	485	489	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	522	523	first strand
Strand 2	B	569	570	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	624	627	first strand
Strand 2	B	662	667	parallel
Strand 3	B	607	619	anti-parallel
Strand 4	B	598	604	anti-parallel
Strand 5	B	702	703	parallel
Strand 6	B	734	737	parallel
Strand 7	B	758	760	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	706	707	first strand
Strand 2	B	713	714	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	378	first strand
Strand 2	C	418	423	parallel
Strand 3	C	469	472	parallel
Strand 4	C	351	355	parallel
Strand 5	C	485	489	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	521	523	first strand
Strand 2	C	568	570	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	624	628	first strand
Strand 2	C	662	668	parallel
Strand 3	C	609	619	anti-parallel
Strand 4	C	597	602	anti-parallel
Strand 5	C	701	703	parallel
Strand 6	C	733	735	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	419	422	first strand
Strand 2	D	467	472	parallel
Strand 3	D	351	355	parallel
Strand 4	D	485	486	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	521	522	first strand
Strand 2	D	568	569	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	598	602	first strand
Strand 2	D	609	619	anti-parallel
Strand 3	D	662	667	anti-parallel
Strand 4	D	624	627	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	701	703	first strand
Strand 2	D	733	737	parallel
Strand 3	D	756	760	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	706	707	first strand
Strand 2	D	713	714	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	378	380	first strand
Strand 2	E	419	422	parallel
Strand 3	E	467	472	parallel
Strand 4	E	351	355	parallel
Strand 5	E	485	489	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	521	523	first strand
Strand 2	E	568	570	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	597	602	first strand
Strand 2	E	609	618	anti-parallel
Strand 3	E	663	667	anti-parallel
Strand 4	E	624	627	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	701	703	first strand
Strand 2	E	733	737	parallel
Strand 3	E	756	760	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	377	380	first strand
Strand 2	F	419	423	parallel
Strand 3	F	467	472	parallel
Strand 4	F	351	355	parallel
Strand 5	F	485	489	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	521	523	first strand
Strand 2	F	568	570	parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	624	627	first strand
Strand 2	F	662	667	parallel
Strand 3	F	608	619	anti-parallel
Strand 4	F	597	603	anti-parallel
Strand 5	F	701	703	parallel
Strand 6	F	733	737	parallel
Strand 7	F	758	760	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	706	707	first strand
Strand 2	F	713	714	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V11

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V11