Analysis of interatomic Contacts of Structural Units in PDB entry:
6V1R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V1R entry

There is 1 chain in PDB entry 6V1R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1VAL 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 6V1R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 30Right-handed alpha
Helix 2
AA2
A
44 53Right-handed alpha
Helix 3
AA3
A
54 57Right-handed 310
Helix 4
AA4
A
66 75Right-handed alpha
Helix 5
AA5
A
81 98Right-handed alpha
Helix 6
AA6
A
117 124Right-handed alpha
Helix 7
AA7
A
127 135Right-handed alpha
Helix 8
AA8
A
136 138Right-handed 310
Helix 9
AA9
A
143 149Right-handed alpha
Helix 10
AB1
A
152 161Right-handed alpha
Helix 11
AB2
A
171 181Right-handed alpha
Helix 12
AB3
A
195 199Right-handed 310
Helix 13
AB4
A
222 228Right-handed alpha
Helix 14
AB5
A
230 236Right-handed alpha
Helix 15
AB6
A
237 239Right-handed 310
Helix 16
AB7
A
243 256Right-handed alpha
Helix 17
AB8
A
260 272Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6V1R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 10first strand
Strand 2
A
33 39parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
216 221anti-parallel
Strand 3
A
99 101anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 169first strand
Strand 2
A
140 142parallel
Strand 3
A
186 187parallel
Strand 4
A
114 116anti-parallel
Strand 5
A
201 203anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il