Analysis of interatomic Contacts of Structural Units in PDB entry:
6V1S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V1S entry

There are 8 chains in PDB entry 6V1S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 217	GLY 556
B	THR 221	GLY 556
C	ASP 224	GLY 556
D	ASP 216	GLY 556
E	ASP 213	GLY 556
F	GLU 217	GLY 556
G	ASP 216	GLY 556
Z	GLU 27	PRO 420

There are 63 helices in PDB entry 6V1S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	227	234	Right-handed alpha
Helix 2	AA2	A	248	253	Right-handed alpha
Helix 3	AA3	A	272	279	Right-handed alpha
Helix 4	AA4	A	286	290	Right-handed 310
Helix 5	AA5	A	425	429	Right-handed 310
Helix 6	AA6	A	464	471	Right-handed alpha
Helix 7	AA7	A	502	506	Right-handed 310
Helix 8	AA8	A	546	556	Right-handed alpha
Helix 9	AA9	B	227	234	Right-handed alpha
Helix 10	AB1	B	272	279	Right-handed alpha
Helix 11	AB2	B	286	290	Right-handed 310
Helix 12	AB3	B	464	473	Right-handed alpha
Helix 13	AB4	B	502	512	Right-handed alpha
Helix 14	AB5	B	546	555	Right-handed alpha
Helix 15	AB6	C	227	234	Right-handed alpha
Helix 16	AB7	C	272	279	Right-handed alpha
Helix 17	AB8	C	286	290	Right-handed 310
Helix 18	AB9	C	464	473	Right-handed alpha
Helix 19	AC1	C	506	513	Right-handed alpha
Helix 20	AC2	C	546	555	Right-handed alpha
Helix 21	AC3	D	227	234	Right-handed alpha
Helix 22	AC4	D	272	278	Right-handed alpha
Helix 23	AC5	D	286	290	Right-handed 310
Helix 24	AC6	D	464	469	Right-handed alpha
Helix 25	AC7	D	507	513	Right-handed alpha
Helix 26	AC8	D	546	555	Right-handed alpha
Helix 27	AC9	E	227	234	Right-handed alpha
Helix 28	AD1	E	247	251	Right-handed 310
Helix 29	AD2	E	272	279	Right-handed alpha
Helix 30	AD3	E	425	429	Right-handed 310
Helix 31	AD4	E	464	473	Right-handed alpha
Helix 32	AD5	E	506	511	Right-handed alpha
Helix 33	AD6	E	546	556	Right-handed alpha
Helix 34	AD7	F	227	234	Right-handed alpha
Helix 35	AD8	F	272	279	Right-handed alpha
Helix 36	AD9	F	286	290	Right-handed 310
Helix 37	AE1	F	463	473	Right-handed alpha
Helix 38	AE2	F	506	513	Right-handed alpha
Helix 39	AE3	F	546	555	Right-handed alpha
Helix 40	AE4	G	227	234	Right-handed alpha
Helix 41	AE5	G	272	279	Right-handed alpha
Helix 42	AE6	G	286	290	Right-handed 310
Helix 43	AE7	G	425	429	Right-handed 310
Helix 44	AE8	G	463	471	Right-handed alpha
Helix 45	AE9	G	502	505	Right-handed 310
Helix 46	AF1	G	506	514	Right-handed alpha
Helix 47	AF2	G	546	555	Right-handed alpha
Helix 48	AF3	Z	28	34	Right-handed alpha
Helix 49	AF4	Z	39	50	Right-handed alpha
Helix 50	AF5	Z	52	62	Right-handed alpha
Helix 51	AF6	Z	67	72	Right-handed alpha
Helix 52	AF7	Z	77	88	Right-handed alpha
Helix 53	AF8	Z	122	133	Right-handed alpha
Helix 54	AF9	Z	223	236	Right-handed alpha
Helix 55	AG1	Z	237	239	Right-handed 310
Helix 56	AG2	Z	243	256	Right-handed alpha
Helix 57	AG3	Z	257	267	Right-handed alpha
Helix 58	AG4	Z	268	273	Right-handed alpha
Helix 59	AG5	Z	275	291	Right-handed alpha
Helix 60	AG6	Z	306	310	Right-handed 310
Helix 61	AG7	Z	315	319	Right-handed 310
Helix 62	AG8	Z	322	333	Right-handed alpha
Helix 63	AG9	Z	375	379	Right-handed 310

There are 42 sheets in PDB entry 6V1S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	237	first strand
Strand 2	A	242	244	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	311	first strand
Strand 2	A	387	399	anti-parallel
Strand 3	A	447	449	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	311	first strand
Strand 2	A	387	399	anti-parallel
Strand 3	A	461	462	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	423	first strand
Strand 2	A	409	413	anti-parallel
Strand 3	A	477	482	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	489	490	first strand
Strand 2	A	496	497	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	520	first strand
Strand 2	A	525	531	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	237	first strand
Strand 2	B	242	244	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	311	first strand
Strand 2	B	387	398	anti-parallel
Strand 3	B	447	449	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	311	first strand
Strand 2	B	387	398	anti-parallel
Strand 3	B	461	462	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	406	first strand
Strand 2	B	430	433	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	422	423	first strand
Strand 2	B	409	413	anti-parallel
Strand 3	B	477	482	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	514	519	first strand
Strand 2	B	526	531	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	238	first strand
Strand 2	C	241	244	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	299	311	first strand
Strand 2	C	387	398	anti-parallel
Strand 3	C	447	449	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	405	first strand
Strand 2	C	431	433	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	417	422	first strand
Strand 2	C	409	414	anti-parallel
Strand 3	C	477	482	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	514	519	first strand
Strand 2	C	526	531	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	237	first strand
Strand 2	D	242	244	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	311	first strand
Strand 2	D	387	399	anti-parallel
Strand 3	D	447	449	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	406	first strand
Strand 2	D	430	431	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	417	422	first strand
Strand 2	D	409	414	anti-parallel
Strand 3	D	477	482	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	491	first strand
Strand 2	D	494	497	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	514	520	first strand
Strand 2	D	525	531	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	235	238	first strand
Strand 2	E	241	244	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	298	311	first strand
Strand 2	E	387	399	anti-parallel
Strand 3	E	437	438	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	298	311	first strand
Strand 2	E	387	399	anti-parallel
Strand 3	E	447	449	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	418	422	first strand
Strand 2	E	409	413	anti-parallel
Strand 3	E	477	482	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	515	520	first strand
Strand 2	E	525	530	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	235	238	first strand
Strand 2	F	241	244	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	298	311	first strand
Strand 2	F	387	399	anti-parallel
Strand 3	F	447	449	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	298	311	first strand
Strand 2	F	387	399	anti-parallel
Strand 3	F	461	462	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	403	406	first strand
Strand 2	F	430	433	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	421	423	first strand
Strand 2	F	409	413	anti-parallel
Strand 3	F	477	482	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	514	520	first strand
Strand 2	F	525	531	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	236	238	first strand
Strand 2	G	241	243	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	298	311	first strand
Strand 2	G	387	399	anti-parallel
Strand 3	G	447	449	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	418	423	first strand
Strand 2	G	409	413	anti-parallel
Strand 3	G	477	480	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	515	520	first strand
Strand 2	G	525	530	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	96	101	first strand
Strand 2	Z	161	167	anti-parallel
Strand 3	Z	205	215	parallel
Strand 4	Z	190	202	anti-parallel
Strand 5	Z	138	140	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	143	146	first strand
Strand 2	Z	184	187	anti-parallel
Strand 3	Z	174	175	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	298	304	first strand
Strand 2	Z	361	367	anti-parallel
Strand 3	Z	409	418	parallel
Strand 4	Z	394	406	anti-parallel
Strand 5	Z	337	340	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	344	347	first strand
Strand 2	Z	387	390	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V1S

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V1S