Analysis of interatomic Contacts of Structural Units in PDB entry:
6V1V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V1V entry

There are 4 chains in PDB entry 6V1V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 22	GLU 794
B	ASP 22	GLU 794
C	ASP 22	GLU 794
D	ASP 22	GLU 794

There are 71 helices in PDB entry 6V1V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	43	Right-handed alpha
Helix 2	AA2	A	56	58	Right-handed 310
Helix 3	AA3	A	59	82	Right-handed alpha
Helix 4	AA4	A	87	121	Right-handed alpha
Helix 5	AA5	A	121	144	Right-handed alpha
Helix 6	AA6	A	145	156	Right-handed alpha
Helix 7	AA7	A	165	193	Right-handed alpha
Helix 8	AA8	A	198	203	Right-handed 310
Helix 9	AA9	A	207	226	Right-handed alpha
Helix 10	AB1	A	231	245	Right-handed alpha
Helix 11	AB2	A	252	263	Right-handed alpha
Helix 12	AB3	A	271	301	Right-handed alpha
Helix 13	AB4	A	308	327	Right-handed alpha
Helix 14	AB5	A	328	331	Right-handed 310
Helix 15	AB6	A	385	387	Right-handed 310
Helix 16	AB7	A	401	407	Right-handed alpha
Helix 17	AB8	A	526	534	Right-handed alpha
Helix 18	AB9	A	535	538	Right-handed 310
Helix 19	AC1	A	688	692	Right-handed 310
Helix 20	AC2	B	25	43	Right-handed alpha
Helix 21	AC3	B	56	58	Right-handed 310
Helix 22	AC4	B	59	82	Right-handed alpha
Helix 23	AC5	B	87	121	Right-handed alpha
Helix 24	AC6	B	121	144	Right-handed alpha
Helix 25	AC7	B	145	156	Right-handed alpha
Helix 26	AC8	B	165	193	Right-handed alpha
Helix 27	AC9	B	198	203	Right-handed 310
Helix 28	AD1	B	207	226	Right-handed alpha
Helix 29	AD2	B	231	245	Right-handed alpha
Helix 30	AD3	B	252	263	Right-handed alpha
Helix 31	AD4	B	271	301	Right-handed alpha
Helix 32	AD5	B	308	327	Right-handed alpha
Helix 33	AD6	B	328	331	Right-handed 310
Helix 34	AD7	B	385	387	Right-handed 310
Helix 35	AD8	B	401	407	Right-handed alpha
Helix 36	AD9	B	526	534	Right-handed alpha
Helix 37	AE1	B	688	692	Right-handed 310
Helix 38	AE2	C	25	43	Right-handed alpha
Helix 39	AE3	C	52	82	Right-handed alpha
Helix 40	AE4	C	87	144	Right-handed alpha
Helix 41	AE5	C	145	147	Right-handed 310
Helix 42	AE6	C	148	156	Right-handed alpha
Helix 43	AE7	C	165	193	Right-handed alpha
Helix 44	AE8	C	215	226	Right-handed alpha
Helix 45	AE9	C	231	245	Right-handed alpha
Helix 46	AF1	C	252	262	Right-handed alpha
Helix 47	AF2	C	271	301	Right-handed alpha
Helix 48	AF3	C	308	327	Right-handed alpha
Helix 49	AF4	C	328	331	Right-handed 310
Helix 50	AF5	C	385	387	Right-handed 310
Helix 51	AF6	C	401	407	Right-handed alpha
Helix 52	AF7	C	526	534	Right-handed alpha
Helix 53	AF8	C	598	601	Right-handed 310
Helix 54	AF9	C	688	692	Right-handed 310
Helix 55	AG1	D	25	43	Right-handed alpha
Helix 56	AG2	D	52	82	Right-handed alpha
Helix 57	AG3	D	87	144	Right-handed alpha
Helix 58	AG4	D	145	147	Right-handed 310
Helix 59	AG5	D	148	156	Right-handed alpha
Helix 60	AG6	D	165	193	Right-handed alpha
Helix 61	AG7	D	215	226	Right-handed alpha
Helix 62	AG8	D	231	245	Right-handed alpha
Helix 63	AG9	D	252	263	Right-handed alpha
Helix 64	AH1	D	271	301	Right-handed alpha
Helix 65	AH2	D	308	327	Right-handed alpha
Helix 66	AH3	D	328	331	Right-handed 310
Helix 67	AH4	D	385	387	Right-handed 310
Helix 68	AH5	D	401	407	Right-handed alpha
Helix 69	AH6	D	526	534	Right-handed alpha
Helix 70	AH7	D	535	538	Right-handed 310
Helix 71	AH8	D	688	692	Right-handed 310

There are 32 sheets in PDB entry 6V1V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	336	first strand
Strand 2	A	519	525	anti-parallel
Strand 3	A	505	512	anti-parallel
Strand 4	A	419	421	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	343	first strand
Strand 2	A	490	497	anti-parallel
Strand 3	A	362	369	anti-parallel
Strand 4	A	375	383	anti-parallel
Strand 5	A	389	400	anti-parallel
Strand 6	A	667	678	parallel
Strand 7	A	584	587	anti-parallel
Strand 8	A	575	578	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	343	first strand
Strand 2	A	490	497	anti-parallel
Strand 3	A	362	369	anti-parallel
Strand 4	A	375	383	anti-parallel
Strand 5	A	389	400	anti-parallel
Strand 6	A	667	678	parallel
Strand 7	A	607	615	anti-parallel
Strand 8	A	636	646	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	465	first strand
Strand 2	A	439	449	anti-parallel
Strand 3	A	413	416	parallel
Strand 4	A	480	483	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	465	first strand
Strand 2	A	439	449	anti-parallel
Strand 3	A	426	436	anti-parallel
Strand 4	A	351	356	anti-parallel
Strand 5	A	681	682	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	569	570	first strand
Strand 2	A	593	596	anti-parallel
Strand 3	A	656	661	anti-parallel
Strand 4	A	617	622	anti-parallel
Strand 5	A	627	631	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	698	699	first strand
Strand 2	A	706	708	anti-parallel
Strand 3	A	784	793	anti-parallel
Strand 4	A	726	741	anti-parallel
Strand 5	A	771	776	anti-parallel
Strand 6	A	713	717	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	698	699	first strand
Strand 2	A	706	708	anti-parallel
Strand 3	A	784	793	anti-parallel
Strand 4	A	726	741	anti-parallel
Strand 5	A	746	761	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	336	first strand
Strand 2	B	519	525	anti-parallel
Strand 3	B	505	512	anti-parallel
Strand 4	B	419	421	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	343	first strand
Strand 2	B	490	497	anti-parallel
Strand 3	B	362	369	anti-parallel
Strand 4	B	375	383	anti-parallel
Strand 5	B	389	400	anti-parallel
Strand 6	B	667	678	parallel
Strand 7	B	584	587	anti-parallel
Strand 8	B	575	578	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	343	first strand
Strand 2	B	490	497	anti-parallel
Strand 3	B	362	369	anti-parallel
Strand 4	B	375	383	anti-parallel
Strand 5	B	389	400	anti-parallel
Strand 6	B	667	678	parallel
Strand 7	B	607	615	anti-parallel
Strand 8	B	636	646	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	465	first strand
Strand 2	B	439	449	anti-parallel
Strand 3	B	413	416	parallel
Strand 4	B	480	483	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	465	first strand
Strand 2	B	439	449	anti-parallel
Strand 3	B	426	436	anti-parallel
Strand 4	B	351	356	anti-parallel
Strand 5	B	681	682	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	569	570	first strand
Strand 2	B	593	596	anti-parallel
Strand 3	B	656	661	anti-parallel
Strand 4	B	617	622	anti-parallel
Strand 5	B	627	631	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	698	699	first strand
Strand 2	B	706	708	anti-parallel
Strand 3	B	784	793	anti-parallel
Strand 4	B	726	741	anti-parallel
Strand 5	B	771	776	anti-parallel
Strand 6	B	714	717	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	698	699	first strand
Strand 2	B	706	708	anti-parallel
Strand 3	B	784	793	anti-parallel
Strand 4	B	726	741	anti-parallel
Strand 5	B	746	761	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	334	336	first strand
Strand 2	C	518	525	anti-parallel
Strand 3	C	505	513	anti-parallel
Strand 4	C	419	421	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	343	first strand
Strand 2	C	490	497	anti-parallel
Strand 3	C	361	370	anti-parallel
Strand 4	C	374	383	anti-parallel
Strand 5	C	389	400	anti-parallel
Strand 6	C	667	678	parallel
Strand 7	C	584	587	anti-parallel
Strand 8	C	575	578	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	343	first strand
Strand 2	C	490	497	anti-parallel
Strand 3	C	361	370	anti-parallel
Strand 4	C	374	383	anti-parallel
Strand 5	C	389	400	anti-parallel
Strand 6	C	667	678	parallel
Strand 7	C	606	615	anti-parallel
Strand 8	C	636	647	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	465	first strand
Strand 2	C	439	449	anti-parallel
Strand 3	C	413	416	parallel
Strand 4	C	480	483	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	465	first strand
Strand 2	C	439	449	anti-parallel
Strand 3	C	426	436	anti-parallel
Strand 4	C	351	356	anti-parallel
Strand 5	C	681	682	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	569	570	first strand
Strand 2	C	593	596	anti-parallel
Strand 3	C	656	661	anti-parallel
Strand 4	C	617	623	anti-parallel
Strand 5	C	626	631	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	698	699	first strand
Strand 2	C	706	708	anti-parallel
Strand 3	C	784	793	anti-parallel
Strand 4	C	726	741	anti-parallel
Strand 5	C	746	752	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	714	718	first strand
Strand 2	C	770	776	anti-parallel
Strand 3	C	726	741	anti-parallel
Strand 4	C	755	761	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	334	336	first strand
Strand 2	D	518	525	anti-parallel
Strand 3	D	505	513	anti-parallel
Strand 4	D	419	421	anti-parallel

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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	343	first strand
Strand 2	D	490	497	anti-parallel
Strand 3	D	361	369	anti-parallel
Strand 4	D	375	383	anti-parallel
Strand 5	D	389	400	anti-parallel
Strand 6	D	673	678	parallel
Strand 7	D	606	615	anti-parallel
Strand 8	D	636	647	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	456	465	first strand
Strand 2	D	439	449	anti-parallel
Strand 3	D	413	416	parallel
Strand 4	D	480	483	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	456	465	first strand
Strand 2	D	439	449	anti-parallel
Strand 3	D	426	436	anti-parallel
Strand 4	D	351	356	anti-parallel
Strand 5	D	681	682	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	569	570	first strand
Strand 2	D	593	596	anti-parallel
Strand 3	D	656	661	anti-parallel
Strand 4	D	617	622	anti-parallel
Strand 5	D	627	631	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	575	577	first strand
Strand 2	D	585	587	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	698	699	first strand
Strand 2	D	706	708	anti-parallel
Strand 3	D	784	793	anti-parallel
Strand 4	D	726	742	anti-parallel
Strand 5	D	771	776	anti-parallel
Strand 6	D	713	717	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	698	699	first strand
Strand 2	D	706	708	anti-parallel
Strand 3	D	784	793	anti-parallel
Strand 4	D	726	742	anti-parallel
Strand 5	D	746	761	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V1V

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V1V