Analysis of interatomic Contacts of Structural Units in PDB entry:
6V1X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V1X entry

There are 4 chains in PDB entry 6V1X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 50	ARG 498
B	HIS 50	ARG 498
C	HIS 50	ARG 498
D	HIS 50	ARG 498

There are 72 helices in PDB entry 6V1X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	83	Right-handed alpha
Helix 2	AA2	A	91	109	Right-handed alpha
Helix 3	AA3	A	128	137	Right-handed alpha
Helix 4	AA4	A	137	146	Right-handed alpha
Helix 5	AA5	A	148	156	Right-handed alpha
Helix 6	AA6	A	162	167	Right-handed alpha
Helix 7	AA7	A	168	174	Right-handed 310
Helix 8	AA8	A	175	188	Right-handed alpha
Helix 9	AA9	A	192	222	Right-handed alpha
Helix 10	AB1	A	242	259	Right-handed alpha
Helix 11	AB2	A	270	303	Right-handed alpha
Helix 12	AB3	A	304	324	Right-handed alpha
Helix 13	AB4	A	327	343	Right-handed alpha
Helix 14	AB5	A	344	354	Right-handed alpha
Helix 15	AB6	A	358	373	Right-handed alpha
Helix 16	AB7	A	383	391	Right-handed alpha
Helix 17	AB8	A	471	478	Right-handed alpha
Helix 18	AB9	A	484	498	Right-handed alpha
Helix 19	AC1	B	56	83	Right-handed alpha
Helix 20	AC2	B	91	109	Right-handed alpha
Helix 21	AC3	B	128	137	Right-handed alpha
Helix 22	AC4	B	137	146	Right-handed alpha
Helix 23	AC5	B	148	156	Right-handed alpha
Helix 24	AC6	B	162	167	Right-handed alpha
Helix 25	AC7	B	168	174	Right-handed 310
Helix 26	AC8	B	175	188	Right-handed alpha
Helix 27	AC9	B	192	222	Right-handed alpha
Helix 28	AD1	B	242	259	Right-handed alpha
Helix 29	AD2	B	270	303	Right-handed alpha
Helix 30	AD3	B	304	324	Right-handed alpha
Helix 31	AD4	B	327	343	Right-handed alpha
Helix 32	AD5	B	344	354	Right-handed alpha
Helix 33	AD6	B	358	373	Right-handed alpha
Helix 34	AD7	B	383	391	Right-handed alpha
Helix 35	AD8	B	471	478	Right-handed alpha
Helix 36	AD9	B	484	498	Right-handed alpha
Helix 37	AE1	C	56	83	Right-handed alpha
Helix 38	AE2	C	91	109	Right-handed alpha
Helix 39	AE3	C	128	137	Right-handed alpha
Helix 40	AE4	C	137	146	Right-handed alpha
Helix 41	AE5	C	148	156	Right-handed alpha
Helix 42	AE6	C	162	167	Right-handed alpha
Helix 43	AE7	C	168	174	Right-handed 310
Helix 44	AE8	C	175	188	Right-handed alpha
Helix 45	AE9	C	192	222	Right-handed alpha
Helix 46	AF1	C	242	259	Right-handed alpha
Helix 47	AF2	C	270	303	Right-handed alpha
Helix 48	AF3	C	304	324	Right-handed alpha
Helix 49	AF4	C	327	343	Right-handed alpha
Helix 50	AF5	C	344	354	Right-handed alpha
Helix 51	AF6	C	358	373	Right-handed alpha
Helix 52	AF7	C	383	391	Right-handed alpha
Helix 53	AF8	C	471	478	Right-handed alpha
Helix 54	AF9	C	484	498	Right-handed alpha
Helix 55	AG1	D	56	83	Right-handed alpha
Helix 56	AG2	D	91	109	Right-handed alpha
Helix 57	AG3	D	128	137	Right-handed alpha
Helix 58	AG4	D	137	146	Right-handed alpha
Helix 59	AG5	D	148	156	Right-handed alpha
Helix 60	AG6	D	162	167	Right-handed alpha
Helix 61	AG7	D	168	174	Right-handed 310
Helix 62	AG8	D	175	188	Right-handed alpha
Helix 63	AG9	D	192	222	Right-handed alpha
Helix 64	AH1	D	242	259	Right-handed alpha
Helix 65	AH2	D	270	303	Right-handed alpha
Helix 66	AH3	D	304	324	Right-handed alpha
Helix 67	AH4	D	327	343	Right-handed alpha
Helix 68	AH5	D	344	354	Right-handed alpha
Helix 69	AH6	D	358	373	Right-handed alpha
Helix 70	AH7	D	383	391	Right-handed alpha
Helix 71	AH8	D	471	478	Right-handed alpha
Helix 72	AH9	D	484	498	Right-handed alpha

There are 8 sheets in PDB entry 6V1X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	405	first strand
Strand 2	A	459	461	anti-parallel
Strand 3	A	422	423	anti-parallel
Strand 4	A	437	438	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	417	first strand
Strand 2	A	467	468	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	405	first strand
Strand 2	B	459	461	anti-parallel
Strand 3	B	422	423	anti-parallel
Strand 4	B	437	438	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	417	first strand
Strand 2	B	467	468	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	405	first strand
Strand 2	C	459	461	anti-parallel
Strand 3	C	422	423	anti-parallel
Strand 4	C	437	438	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	416	417	first strand
Strand 2	C	467	468	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	403	405	first strand
Strand 2	D	459	461	anti-parallel
Strand 3	D	422	423	anti-parallel
Strand 4	D	437	438	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	416	417	first strand
Strand 2	D	467	468	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V1X

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V1X