Analysis of interatomic Contacts of Structural Units in PDB entry:
6V2T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V2T entry

There are 2 chains in PDB entry 6V2T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0LYS 245
B
 ASN -8LYS 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6V2T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 24Right-handed alpha
Helix 2
AA2
A
44 49Right-handed alpha
Helix 3
AA3
A
59 70Right-handed alpha
Helix 4
AA4
A
83 88Right-handed alpha
Helix 5
AA5
A
107 116Right-handed alpha
Helix 6
AA6
A
148 173Right-handed alpha
Helix 7
AA7
A
189 198Right-handed alpha
Helix 8
AA8
A
207 217Right-handed alpha
Helix 9
AA9
B
10 24Right-handed alpha
Helix 10
AB1
B
44 49Right-handed alpha
Helix 11
AB2
B
59 70Right-handed alpha
Helix 12
AB3
B
83 88Right-handed alpha
Helix 13
AB4
B
107 116Right-handed alpha
Helix 14
AB5
B
148 173Right-handed alpha
Helix 15
AB6
B
189 198Right-handed alpha
Helix 16
AB7
B
207 217Right-handed alpha
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There are 6 sheets in PDB entry 6V2T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
31 38parallel
Strand 3
A
2 8parallel
Strand 4
A
72 76parallel
Strand 5
A
91 96parallel
Strand 6
A
119 125anti-parallel
Strand 7
A
135 141anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
A
187 188parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 206first strand
Strand 2
B
204 206anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 228first strand
Strand 2
A
234 244anti-parallel
Strand 3
B
234 244anti-parallel
Strand 4
B
226 228anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
31 38parallel
Strand 3
B
2 8parallel
Strand 4
B
72 76parallel
Strand 5
B
91 96parallel
Strand 6
B
119 125anti-parallel
Strand 7
B
135 141anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 105first strand
Strand 2
B
187 188parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il