Analysis of interatomic Contacts of Structural Units in PDB entry:
6V2W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V2W entry

There are 2 chains in PDB entry 6V2W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 447LEU 721
B
 LEU 40GLN 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 6V2W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
491 506Right-handed alpha
Helix 2
AA2
A
536 543Right-handed alpha
Helix 3
AA3
A
549 570Right-handed alpha
Helix 4
AA4
A
578 580Right-handed 310
Helix 5
AA5
A
586 588Right-handed 310
Helix 6
AA6
A
597 601Right-handed 310
Helix 7
AA7
A
616 620Right-handed 310
Helix 8
AA8
A
621 627Right-handed alpha
Helix 9
AA9
A
634 652Right-handed alpha
Helix 10
AB1
A
661 671Right-handed alpha
Helix 11
AB2
A
677 681Right-handed 310
Helix 12
AB3
A
686 697Right-handed alpha
Helix 13
AB4
A
700 704Right-handed 310
Helix 14
AB5
A
706 720Right-handed alpha
Helix 15
AB6
B
43 59Right-handed alpha
Helix 16
AB7
B
64 66Right-handed 310
Helix 17
AB8
B
104 116Right-handed alpha
Helix 18
AB9
B
117 120Right-handed 310
Helix 19
AC1
B
151 159Right-handed alpha
Helix 20
AC2
B
162 184Right-handed alpha
Helix 21
AC3
B
192 194Right-handed 310
Helix 22
AC4
B
212 220Right-handed alpha
Helix 23
AC5
B
231 237Right-handed alpha
Helix 24
AC6
B
242 259Right-handed alpha
Helix 25
AC7
B
267 273Right-handed alpha
Helix 26
AC8
B
309 320Right-handed alpha
Helix 27
AC9
B
331 342Right-handed alpha
Helix 28
AD1
B
351 357Right-handed alpha
Helix 29
AD2
B
358 367Right-handed alpha
Helix 30
AD3
B
370 380Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6V2W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 452first strand
Strand 2
A
516 520parallel
Strand 3
A
526 530anti-parallel
Strand 4
A
479 485anti-parallel
Strand 5
A
469 475anti-parallel
Strand 6
A
458 465anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 585first strand
Strand 2
A
589 592anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 77first strand
Strand 2
B
80 87anti-parallel
Strand 3
B
93 99anti-parallel
Strand 4
B
138 144anti-parallel
Strand 5
B
129 135anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
196 198anti-parallel
Strand 3
B
204 206anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il