Analysis of interatomic Contacts of Structural Units in PDB entry:
6V33


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V33 entry

There are 2 chains in PDB entry 6V33 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 12HIS 257
B
 SER 11LEU 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6V33. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 36Right-handed alpha
Helix 2
AA2
A
54 59Right-handed alpha
Helix 3
AA3
A
69 80Right-handed alpha
Helix 4
AA4
A
93 100Right-handed alpha
Helix 5
AA5
A
117 126Right-handed alpha
Helix 6
AA6
A
158 184Right-handed alpha
Helix 7
AA7
A
199 208Right-handed alpha
Helix 8
AA8
A
217 228Right-handed alpha
Helix 9
AA9
B
21 34Right-handed alpha
Helix 10
AB1
B
54 59Right-handed alpha
Helix 11
AB2
B
69 80Right-handed alpha
Helix 12
AB3
B
93 98Right-handed alpha
Helix 13
AB4
B
117 126Right-handed alpha
Helix 14
AB5
B
158 183Right-handed alpha
Helix 15
AB6
B
199 208Right-handed alpha
Helix 16
AB7
B
217 227Right-handed alpha
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There are 6 sheets in PDB entry 6V33. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
41 48parallel
Strand 3
A
13 19parallel
Strand 4
A
82 86parallel
Strand 5
A
102 106parallel
Strand 6
A
129 135anti-parallel
Strand 7
A
145 151anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
197 198parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
B
214 216anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 238first strand
Strand 2
A
244 253anti-parallel
Strand 3
B
244 253anti-parallel
Strand 4
B
236 238anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 65first strand
Strand 2
B
41 48parallel
Strand 3
B
13 19parallel
Strand 4
B
82 86parallel
Strand 5
B
101 106parallel
Strand 6
B
129 135anti-parallel
Strand 7
B
145 151anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 115first strand
Strand 2
B
197 198parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il