Analysis of interatomic Contacts of Structural Units in PDB entry:
6V35

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V35 entry

There are 8 chains in PDB entry 6V35 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 19	ASP 1056
E	TYR 2008	LYS 2205
B	GLN 19	ASP 1056
F	TYR 2008	LYS 2205
C	GLN 19	ASP 1056
G	TYR 2008	LYS 2205
D	GLN 19	ASP 1056
H	TYR 2008	LYS 2205

There are212 helices in PDB entry 6V35. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	47	Right-handed alpha
Helix 2	AA2	A	96	101	Right-handed alpha
Helix 3	AA3	A	101	106	Right-handed alpha
Helix 4	AA4	A	109	134	Right-handed alpha
Helix 5	AA5	A	148	167	Right-handed alpha
Helix 6	AA6	A	173	180	Right-handed alpha
Helix 7	AA7	A	189	200	Right-handed alpha
Helix 8	AA8	A	207	215	Right-handed 310
Helix 9	AA9	A	216	224	Right-handed alpha
Helix 10	AB1	A	229	259	Right-handed alpha
Helix 11	AB2	A	261	265	Right-handed 310
Helix 12	AB3	A	273	286	Right-handed alpha
Helix 13	AB4	A	297	317	Right-handed alpha
Helix 14	AB5	A	322	326	Right-handed 310
Helix 15	AB6	A	352	364	Right-handed alpha
Helix 16	AB7	A	365	369	Right-handed 310
Helix 17	AB8	A	384	392	Right-handed alpha
Helix 18	AB9	A	407	414	Right-handed alpha
Helix 19	AC1	A	432	451	Right-handed alpha
Helix 20	AC2	A	463	465	Right-handed 310
Helix 21	AC3	A	466	472	Right-handed alpha
Helix 22	AC4	A	486	500	Right-handed alpha
Helix 23	AC5	A	502	512	Right-handed alpha
Helix 24	AC6	A	523	529	Right-handed alpha
Helix 25	AC7	A	542	546	Right-handed 310
Helix 26	AC8	A	549	561	Right-handed alpha
Helix 27	AC9	A	601	607	Right-handed alpha
Helix 28	AD1	A	621	625	Right-handed 310
Helix 29	AD2	A	699	704	Right-handed alpha
Helix 30	AD3	A	706	713	Right-handed alpha
Helix 31	AD4	A	734	742	Right-handed alpha
Helix 32	AD5	A	759	767	Right-handed alpha
Helix 33	AD6	A	768	770	Right-handed 310
Helix 34	AD7	A	785	791	Right-handed alpha
Helix 35	AD8	A	812	816	Right-handed 310
Helix 36	AD9	A	817	829	Right-handed alpha
Helix 37	AE1	A	872	876	Right-handed 310
Helix 38	AE2	A	884	891	Right-handed 310
Helix 39	AE3	A	906	911	Right-handed alpha
Helix 40	AE4	A	917	930	Right-handed alpha
Helix 41	AE5	A	932	942	Right-handed alpha
Helix 42	AE6	A	946	957	Right-handed alpha
Helix 43	AE7	A	965	972	Right-handed alpha
Helix 44	AE8	A	985	992	Right-handed 310
Helix 45	AE9	A	995	1008	Right-handed alpha
Helix 46	AF1	A	1017	1021	Right-handed 310
Helix 47	AF2	E	2011	2036	Right-handed alpha
Helix 48	AF3	E	2039	2047	Right-handed alpha
Helix 49	AF4	E	2103	2110	Right-handed alpha
Helix 50	AF5	E	2122	2139	Right-handed alpha
Helix 51	AF6	E	2166	2169	Right-handed 310
Helix 52	AF7	E	2170	2200	Right-handed alpha
Helix 53	AF8	E	2201	2204	Right-handed 310
Helix 54	AF9	B	22	47	Right-handed alpha
Helix 55	AG1	B	96	101	Right-handed alpha
Helix 56	AG2	B	101	106	Right-handed alpha
Helix 57	AG3	B	109	134	Right-handed alpha
Helix 58	AG4	B	148	167	Right-handed alpha
Helix 59	AG5	B	173	180	Right-handed alpha
Helix 60	AG6	B	189	200	Right-handed alpha
Helix 61	AG7	B	207	215	Right-handed 310
Helix 62	AG8	B	216	224	Right-handed alpha
Helix 63	AG9	B	229	259	Right-handed alpha
Helix 64	AH1	B	261	265	Right-handed 310
Helix 65	AH2	B	273	286	Right-handed alpha
Helix 66	AH3	B	297	317	Right-handed alpha
Helix 67	AH4	B	322	326	Right-handed 310
Helix 68	AH5	B	352	364	Right-handed alpha
Helix 69	AH6	B	365	369	Right-handed 310
Helix 70	AH7	B	384	392	Right-handed alpha
Helix 71	AH8	B	407	414	Right-handed alpha
Helix 72	AH9	B	432	451	Right-handed alpha
Helix 73	AI1	B	463	465	Right-handed 310
Helix 74	AI2	B	466	472	Right-handed alpha
Helix 75	AI3	B	486	500	Right-handed alpha
Helix 76	AI4	B	502	512	Right-handed alpha
Helix 77	AI5	B	523	529	Right-handed alpha
Helix 78	AI6	B	542	546	Right-handed 310
Helix 79	AI7	B	549	561	Right-handed alpha
Helix 80	AI8	B	601	607	Right-handed alpha
Helix 81	AI9	B	621	625	Right-handed 310
Helix 82	AJ1	B	699	704	Right-handed alpha
Helix 83	AJ2	B	706	713	Right-handed alpha
Helix 84	AJ3	B	734	742	Right-handed alpha
Helix 85	AJ4	B	759	767	Right-handed alpha
Helix 86	AJ5	B	768	770	Right-handed 310
Helix 87	AJ6	B	785	791	Right-handed alpha
Helix 88	AJ7	B	812	816	Right-handed 310
Helix 89	AJ8	B	817	829	Right-handed alpha
Helix 90	AJ9	B	872	876	Right-handed 310
Helix 91	AK1	B	884	891	Right-handed 310
Helix 92	AK2	B	906	911	Right-handed alpha
Helix 93	AK3	B	917	930	Right-handed alpha
Helix 94	AK4	B	932	942	Right-handed alpha
Helix 95	AK5	B	946	957	Right-handed alpha
Helix 96	AK6	B	965	972	Right-handed alpha
Helix 97	AK7	B	985	992	Right-handed 310
Helix 98	AK8	B	995	1008	Right-handed alpha
Helix 99	AK9	B	1017	1021	Right-handed 310
Helix 100	AL1	F	2011	2036	Right-handed alpha
Helix 101	AL2	F	2039	2047	Right-handed alpha
Helix 102	AL3	F	2103	2110	Right-handed alpha
Helix 103	AL4	F	2122	2139	Right-handed alpha
Helix 104	AL5	F	2166	2169	Right-handed 310
Helix 105	AL6	F	2170	2200	Right-handed alpha
Helix 106	AL7	F	2201	2204	Right-handed 310
Helix 107	AL8	C	22	47	Right-handed alpha
Helix 108	AL9	C	96	101	Right-handed alpha
Helix 109	AM1	C	101	106	Right-handed alpha
Helix 110	AM2	C	109	134	Right-handed alpha
Helix 111	AM3	C	148	167	Right-handed alpha
Helix 112	AM4	C	173	180	Right-handed alpha
Helix 113	AM5	C	189	200	Right-handed alpha
Helix 114	AM6	C	207	215	Right-handed 310
Helix 115	AM7	C	216	224	Right-handed alpha
Helix 116	AM8	C	229	259	Right-handed alpha
Helix 117	AM9	C	261	265	Right-handed 310
Helix 118	AN1	C	273	286	Right-handed alpha
Helix 119	AN2	C	297	317	Right-handed alpha
Helix 120	AN3	C	322	326	Right-handed 310
Helix 121	AN4	C	352	364	Right-handed alpha
Helix 122	AN5	C	365	369	Right-handed 310
Helix 123	AN6	C	384	392	Right-handed alpha
Helix 124	AN7	C	407	414	Right-handed alpha
Helix 125	AN8	C	432	451	Right-handed alpha
Helix 126	AN9	C	463	465	Right-handed 310
Helix 127	AO1	C	466	472	Right-handed alpha
Helix 128	AO2	C	486	500	Right-handed alpha
Helix 129	AO3	C	502	512	Right-handed alpha
Helix 130	AO4	C	523	529	Right-handed alpha
Helix 131	AO5	C	542	546	Right-handed 310
Helix 132	AO6	C	549	561	Right-handed alpha
Helix 133	AO7	C	601	607	Right-handed alpha
Helix 134	AO8	C	621	625	Right-handed 310
Helix 135	AO9	C	699	704	Right-handed alpha
Helix 136	AP1	C	706	713	Right-handed alpha
Helix 137	AP2	C	734	742	Right-handed alpha
Helix 138	AP3	C	759	767	Right-handed alpha
Helix 139	AP4	C	768	770	Right-handed 310
Helix 140	AP5	C	785	791	Right-handed alpha
Helix 141	AP6	C	812	816	Right-handed 310
Helix 142	AP7	C	817	829	Right-handed alpha
Helix 143	AP8	C	872	876	Right-handed 310
Helix 144	AP9	C	884	891	Right-handed 310
Helix 145	AQ1	C	906	911	Right-handed alpha
Helix 146	AQ2	C	917	930	Right-handed alpha
Helix 147	AQ3	C	932	942	Right-handed alpha
Helix 148	AQ4	C	946	957	Right-handed alpha
Helix 149	AQ5	C	965	972	Right-handed alpha
Helix 150	AQ6	C	985	992	Right-handed 310
Helix 151	AQ7	C	995	1008	Right-handed alpha
Helix 152	AQ8	C	1017	1021	Right-handed 310
Helix 153	AQ9	G	2011	2036	Right-handed alpha
Helix 154	AR1	G	2039	2047	Right-handed alpha
Helix 155	AR2	G	2103	2110	Right-handed alpha
Helix 156	AR3	G	2122	2139	Right-handed alpha
Helix 157	AR4	G	2166	2169	Right-handed 310
Helix 158	AR5	G	2170	2200	Right-handed alpha
Helix 159	AR6	G	2201	2204	Right-handed 310
Helix 160	AR7	D	22	47	Right-handed alpha
Helix 161	AR8	D	96	101	Right-handed alpha
Helix 162	AR9	D	101	106	Right-handed alpha
Helix 163	AS1	D	109	134	Right-handed alpha
Helix 164	AS2	D	148	167	Right-handed alpha
Helix 165	AS3	D	173	180	Right-handed alpha
Helix 166	AS4	D	189	200	Right-handed alpha
Helix 167	AS5	D	207	215	Right-handed 310
Helix 168	AS6	D	216	224	Right-handed alpha
Helix 169	AS7	D	229	259	Right-handed alpha
Helix 170	AS8	D	261	265	Right-handed 310
Helix 171	AS9	D	273	286	Right-handed alpha
Helix 172	AT1	D	297	317	Right-handed alpha
Helix 173	AT2	D	322	326	Right-handed 310
Helix 174	AT3	D	352	364	Right-handed alpha
Helix 175	AT4	D	365	369	Right-handed 310
Helix 176	AT5	D	384	392	Right-handed alpha
Helix 177	AT6	D	407	414	Right-handed alpha
Helix 178	AT7	D	432	451	Right-handed alpha
Helix 179	AT8	D	463	465	Right-handed 310
Helix 180	AT9	D	466	472	Right-handed alpha
Helix 181	AU1	D	486	500	Right-handed alpha
Helix 182	AU2	D	502	512	Right-handed alpha
Helix 183	AU3	D	523	529	Right-handed alpha
Helix 184	AU4	D	542	546	Right-handed 310
Helix 185	AU5	D	549	561	Right-handed alpha
Helix 186	AU6	D	601	607	Right-handed alpha
Helix 187	AU7	D	621	625	Right-handed 310
Helix 188	AU8	D	699	704	Right-handed alpha
Helix 189	AU9	D	706	713	Right-handed alpha
Helix 190	AV1	D	734	742	Right-handed alpha
Helix 191	AV2	D	759	767	Right-handed alpha
Helix 192	AV3	D	768	770	Right-handed 310
Helix 193	AV4	D	785	791	Right-handed alpha
Helix 194	AV5	D	812	816	Right-handed 310
Helix 195	AV6	D	817	829	Right-handed alpha
Helix 196	AV7	D	872	876	Right-handed 310
Helix 197	AV8	D	884	891	Right-handed 310
Helix 198	AV9	D	906	911	Right-handed alpha
Helix 199	AW1	D	917	930	Right-handed alpha
Helix 200	AW2	D	932	942	Right-handed alpha
Helix 201	AW3	D	946	957	Right-handed alpha
Helix 202	AW4	D	965	972	Right-handed alpha
Helix 203	AW5	D	985	992	Right-handed 310
Helix 204	AW6	D	995	1008	Right-handed alpha
Helix 205	AW7	D	1017	1021	Right-handed 310
Helix 206	AW8	H	2011	2036	Right-handed alpha
Helix 207	AW9	H	2039	2047	Right-handed alpha
Helix 208	AX1	H	2103	2110	Right-handed alpha
Helix 209	AX2	H	2122	2139	Right-handed alpha
Helix 210	AX3	H	2166	2169	Right-handed 310
Helix 211	AX4	H	2170	2200	Right-handed alpha
Helix 212	AX5	H	2201	2204	Right-handed 310

There are 28 sheets in PDB entry 6V35. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	402	first strand
Strand 2	A	373	379	parallel
Strand 3	A	343	349	parallel
Strand 4	A	421	425	parallel
Strand 5	A	455	460	parallel
Strand 6	A	482	485	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	540	first strand
Strand 2	A	594	599	anti-parallel
Strand 3	A	564	567	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	569	570	first strand
Strand 2	A	578	579	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	776	780	first strand
Strand 2	A	754	758	parallel
Strand 3	A	719	722	parallel
Strand 4	A	799	802	parallel
Strand 5	A	878	882	parallel
Strand 6	A	914	916	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	978	981	first strand
Strand 2	A	1048	1051	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2050	2061	first strand
Strand 2	E	2085	2090	anti-parallel
Strand 3	E	2097	2101	anti-parallel
Strand 4	E	2158	2160	parallel
Strand 5	E	2146	2150	anti-parallel
Strand 6	E	2050	2061	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2066	2067	first strand
Strand 2	E	2081	2082	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	402	first strand
Strand 2	B	373	379	parallel
Strand 3	B	343	349	parallel
Strand 4	B	421	425	parallel
Strand 5	B	455	460	parallel
Strand 6	B	482	485	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	540	first strand
Strand 2	B	594	599	anti-parallel
Strand 3	B	564	567	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	569	570	first strand
Strand 2	B	578	579	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	776	780	first strand
Strand 2	B	754	758	parallel
Strand 3	B	719	722	parallel
Strand 4	B	799	802	parallel
Strand 5	B	878	882	parallel
Strand 6	B	914	916	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	978	981	first strand
Strand 2	B	1048	1051	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2050	2061	first strand
Strand 2	F	2085	2090	anti-parallel
Strand 3	F	2097	2101	anti-parallel
Strand 4	F	2158	2160	parallel
Strand 5	F	2146	2150	anti-parallel
Strand 6	F	2050	2061	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2066	2067	first strand
Strand 2	F	2081	2082	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	402	first strand
Strand 2	C	373	379	parallel
Strand 3	C	343	349	parallel
Strand 4	C	421	425	parallel
Strand 5	C	455	460	parallel
Strand 6	C	482	485	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	540	first strand
Strand 2	C	594	599	anti-parallel
Strand 3	C	564	567	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	569	570	first strand
Strand 2	C	578	579	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	776	780	first strand
Strand 2	C	754	758	parallel
Strand 3	C	719	722	parallel
Strand 4	C	799	802	parallel
Strand 5	C	878	882	parallel
Strand 6	C	914	916	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	978	981	first strand
Strand 2	C	1048	1051	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2050	2061	first strand
Strand 2	G	2085	2090	anti-parallel
Strand 3	G	2097	2101	anti-parallel
Strand 4	G	2158	2160	parallel
Strand 5	G	2146	2150	anti-parallel
Strand 6	G	2050	2061	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2066	2067	first strand
Strand 2	G	2081	2082	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	398	402	first strand
Strand 2	D	373	379	parallel
Strand 3	D	343	349	parallel
Strand 4	D	421	425	parallel
Strand 5	D	455	460	parallel
Strand 6	D	482	485	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	535	540	first strand
Strand 2	D	594	599	anti-parallel
Strand 3	D	564	567	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	569	570	first strand
Strand 2	D	578	579	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	776	780	first strand
Strand 2	D	754	758	parallel
Strand 3	D	719	722	parallel
Strand 4	D	799	802	parallel
Strand 5	D	878	882	parallel
Strand 6	D	914	916	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	978	981	first strand
Strand 2	D	1048	1051	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2050	2061	first strand
Strand 2	H	2085	2090	anti-parallel
Strand 3	H	2097	2101	anti-parallel
Strand 4	H	2158	2160	parallel
Strand 5	H	2146	2150	anti-parallel
Strand 6	H	2050	2061	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2066	2067	first strand
Strand 2	H	2081	2082	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V35

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V35