Analysis of interatomic Contacts of Structural Units in PDB entry:
6V38

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V38 entry

There are 4 chains in PDB entry 6V38 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 19	ASP 1056
B	GLN 19	ASP 1056
C	GLN 19	ASP 1056
D	GLN 19	ASP 1056

There are164 helices in PDB entry 6V38. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	48	Right-handed alpha
Helix 2	AA2	A	49	51	Right-handed 310
Helix 3	AA3	A	94	106	Right-handed alpha
Helix 4	AA4	A	109	134	Right-handed alpha
Helix 5	AA5	A	150	171	Right-handed alpha
Helix 6	AA6	A	173	179	Right-handed alpha
Helix 7	AA7	A	180	200	Right-handed alpha
Helix 8	AA8	A	205	215	Right-handed 310
Helix 9	AA9	A	216	224	Right-handed alpha
Helix 10	AB1	A	229	259	Right-handed alpha
Helix 11	AB2	A	273	286	Right-handed alpha
Helix 12	AB3	A	297	326	Right-handed alpha
Helix 13	AB4	A	352	364	Right-handed alpha
Helix 14	AB5	A	384	394	Right-handed alpha
Helix 15	AB6	A	407	414	Right-handed alpha
Helix 16	AB7	A	434	451	Right-handed alpha
Helix 17	AB8	A	463	472	Right-handed alpha
Helix 18	AB9	A	486	498	Right-handed alpha
Helix 19	AC1	A	502	509	Right-handed alpha
Helix 20	AC2	A	523	533	Right-handed alpha
Helix 21	AC3	A	542	547	Right-handed alpha
Helix 22	AC4	A	549	555	Right-handed alpha
Helix 23	AC5	A	556	562	Right-handed alpha
Helix 24	AC6	A	601	606	Right-handed alpha
Helix 25	AC7	A	699	704	Right-handed alpha
Helix 26	AC8	A	706	713	Right-handed alpha
Helix 27	AC9	A	734	739	Right-handed alpha
Helix 28	AD1	A	740	743	Right-handed 310
Helix 29	AD2	A	759	768	Right-handed alpha
Helix 30	AD3	A	785	792	Right-handed alpha
Helix 31	AD4	A	806	809	Right-handed 310
Helix 32	AD5	A	817	830	Right-handed alpha
Helix 33	AD6	A	884	891	Right-handed 310
Helix 34	AD7	A	906	912	Right-handed alpha
Helix 35	AD8	A	918	920	Right-handed 310
Helix 36	AD9	A	921	930	Right-handed alpha
Helix 37	AE1	A	931	942	Right-handed alpha
Helix 38	AE2	A	946	957	Right-handed alpha
Helix 39	AE3	A	965	970	Right-handed alpha
Helix 40	AE4	A	995	1008	Right-handed alpha
Helix 41	AE5	A	1019	1022	Right-handed 310
Helix 42	AE6	B	22	48	Right-handed alpha
Helix 43	AE7	B	49	51	Right-handed 310
Helix 44	AE8	B	94	106	Right-handed alpha
Helix 45	AE9	B	109	134	Right-handed alpha
Helix 46	AF1	B	150	171	Right-handed alpha
Helix 47	AF2	B	173	179	Right-handed alpha
Helix 48	AF3	B	180	200	Right-handed alpha
Helix 49	AF4	B	205	215	Right-handed 310
Helix 50	AF5	B	216	224	Right-handed alpha
Helix 51	AF6	B	229	259	Right-handed alpha
Helix 52	AF7	B	273	286	Right-handed alpha
Helix 53	AF8	B	297	326	Right-handed alpha
Helix 54	AF9	B	352	364	Right-handed alpha
Helix 55	AG1	B	384	394	Right-handed alpha
Helix 56	AG2	B	407	414	Right-handed alpha
Helix 57	AG3	B	434	451	Right-handed alpha
Helix 58	AG4	B	463	472	Right-handed alpha
Helix 59	AG5	B	486	498	Right-handed alpha
Helix 60	AG6	B	502	509	Right-handed alpha
Helix 61	AG7	B	523	533	Right-handed alpha
Helix 62	AG8	B	542	547	Right-handed alpha
Helix 63	AG9	B	549	555	Right-handed alpha
Helix 64	AH1	B	556	562	Right-handed alpha
Helix 65	AH2	B	601	606	Right-handed alpha
Helix 66	AH3	B	699	704	Right-handed alpha
Helix 67	AH4	B	706	713	Right-handed alpha
Helix 68	AH5	B	734	739	Right-handed alpha
Helix 69	AH6	B	740	743	Right-handed 310
Helix 70	AH7	B	759	768	Right-handed alpha
Helix 71	AH8	B	785	792	Right-handed alpha
Helix 72	AH9	B	806	809	Right-handed 310
Helix 73	AI1	B	817	830	Right-handed alpha
Helix 74	AI2	B	884	891	Right-handed 310
Helix 75	AI3	B	906	912	Right-handed alpha
Helix 76	AI4	B	918	920	Right-handed 310
Helix 77	AI5	B	921	930	Right-handed alpha
Helix 78	AI6	B	931	942	Right-handed alpha
Helix 79	AI7	B	946	957	Right-handed alpha
Helix 80	AI8	B	965	970	Right-handed alpha
Helix 81	AI9	B	995	1008	Right-handed alpha
Helix 82	AJ1	B	1019	1022	Right-handed 310
Helix 83	AJ2	C	22	48	Right-handed alpha
Helix 84	AJ3	C	49	51	Right-handed 310
Helix 85	AJ4	C	94	106	Right-handed alpha
Helix 86	AJ5	C	109	134	Right-handed alpha
Helix 87	AJ6	C	150	171	Right-handed alpha
Helix 88	AJ7	C	173	179	Right-handed alpha
Helix 89	AJ8	C	180	200	Right-handed alpha
Helix 90	AJ9	C	205	215	Right-handed 310
Helix 91	AK1	C	216	224	Right-handed alpha
Helix 92	AK2	C	229	259	Right-handed alpha
Helix 93	AK3	C	273	286	Right-handed alpha
Helix 94	AK4	C	297	326	Right-handed alpha
Helix 95	AK5	C	352	364	Right-handed alpha
Helix 96	AK6	C	384	394	Right-handed alpha
Helix 97	AK7	C	407	414	Right-handed alpha
Helix 98	AK8	C	434	451	Right-handed alpha
Helix 99	AK9	C	463	472	Right-handed alpha
Helix 100	AL1	C	486	498	Right-handed alpha
Helix 101	AL2	C	502	509	Right-handed alpha
Helix 102	AL3	C	523	533	Right-handed alpha
Helix 103	AL4	C	542	547	Right-handed alpha
Helix 104	AL5	C	549	555	Right-handed alpha
Helix 105	AL6	C	556	562	Right-handed alpha
Helix 106	AL7	C	601	606	Right-handed alpha
Helix 107	AL8	C	699	704	Right-handed alpha
Helix 108	AL9	C	706	713	Right-handed alpha
Helix 109	AM1	C	734	739	Right-handed alpha
Helix 110	AM2	C	740	743	Right-handed 310
Helix 111	AM3	C	759	768	Right-handed alpha
Helix 112	AM4	C	785	792	Right-handed alpha
Helix 113	AM5	C	806	809	Right-handed 310
Helix 114	AM6	C	817	830	Right-handed alpha
Helix 115	AM7	C	884	891	Right-handed 310
Helix 116	AM8	C	906	912	Right-handed alpha
Helix 117	AM9	C	918	920	Right-handed 310
Helix 118	AN1	C	921	930	Right-handed alpha
Helix 119	AN2	C	931	942	Right-handed alpha
Helix 120	AN3	C	946	957	Right-handed alpha
Helix 121	AN4	C	965	970	Right-handed alpha
Helix 122	AN5	C	995	1008	Right-handed alpha
Helix 123	AN6	C	1019	1022	Right-handed 310
Helix 124	AN7	D	22	48	Right-handed alpha
Helix 125	AN8	D	49	51	Right-handed 310
Helix 126	AN9	D	94	106	Right-handed alpha
Helix 127	AO1	D	109	134	Right-handed alpha
Helix 128	AO2	D	150	171	Right-handed alpha
Helix 129	AO3	D	173	179	Right-handed alpha
Helix 130	AO4	D	180	200	Right-handed alpha
Helix 131	AO5	D	205	215	Right-handed 310
Helix 132	AO6	D	216	224	Right-handed alpha
Helix 133	AO7	D	229	259	Right-handed alpha
Helix 134	AO8	D	273	286	Right-handed alpha
Helix 135	AO9	D	297	326	Right-handed alpha
Helix 136	AP1	D	352	364	Right-handed alpha
Helix 137	AP2	D	384	394	Right-handed alpha
Helix 138	AP3	D	407	414	Right-handed alpha
Helix 139	AP4	D	434	451	Right-handed alpha
Helix 140	AP5	D	463	472	Right-handed alpha
Helix 141	AP6	D	486	498	Right-handed alpha
Helix 142	AP7	D	502	509	Right-handed alpha
Helix 143	AP8	D	523	533	Right-handed alpha
Helix 144	AP9	D	542	547	Right-handed alpha
Helix 145	AQ1	D	549	555	Right-handed alpha
Helix 146	AQ2	D	556	562	Right-handed alpha
Helix 147	AQ3	D	601	606	Right-handed alpha
Helix 148	AQ4	D	699	704	Right-handed alpha
Helix 149	AQ5	D	706	713	Right-handed alpha
Helix 150	AQ6	D	734	739	Right-handed alpha
Helix 151	AQ7	D	740	743	Right-handed 310
Helix 152	AQ8	D	759	768	Right-handed alpha
Helix 153	AQ9	D	785	792	Right-handed alpha
Helix 154	AR1	D	806	809	Right-handed 310
Helix 155	AR2	D	817	830	Right-handed alpha
Helix 156	AR3	D	884	891	Right-handed 310
Helix 157	AR4	D	906	912	Right-handed alpha
Helix 158	AR5	D	918	920	Right-handed 310
Helix 159	AR6	D	921	930	Right-handed alpha
Helix 160	AR7	D	931	942	Right-handed alpha
Helix 161	AR8	D	946	957	Right-handed alpha
Helix 162	AR9	D	965	970	Right-handed alpha
Helix 163	AS1	D	995	1008	Right-handed alpha
Helix 164	AS2	D	1019	1022	Right-handed 310

There are 20 sheets in PDB entry 6V38. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	140	first strand
Strand 2	A	202	203	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	399	first strand
Strand 2	A	374	377	parallel
Strand 3	A	344	349	parallel
Strand 4	A	421	425	parallel
Strand 5	A	455	460	parallel
Strand 6	A	482	485	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	537	540	first strand
Strand 2	A	594	597	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	776	780	first strand
Strand 2	A	754	758	parallel
Strand 3	A	719	724	parallel
Strand 4	A	799	804	parallel
Strand 5	A	878	882	parallel
Strand 6	A	914	916	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	977	981	first strand
Strand 2	A	1048	1052	anti-parallel
Strand 3	A	1010	1017	anti-parallel
Strand 4	A	1031	1035	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	140	first strand
Strand 2	B	202	203	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	399	first strand
Strand 2	B	374	377	parallel
Strand 3	B	344	349	parallel
Strand 4	B	421	425	parallel
Strand 5	B	455	460	parallel
Strand 6	B	482	485	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	537	540	first strand
Strand 2	B	594	597	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	776	780	first strand
Strand 2	B	754	758	parallel
Strand 3	B	719	724	parallel
Strand 4	B	799	804	parallel
Strand 5	B	878	882	parallel
Strand 6	B	914	916	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	977	981	first strand
Strand 2	B	1048	1052	anti-parallel
Strand 3	B	1010	1017	anti-parallel
Strand 4	B	1031	1035	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	140	first strand
Strand 2	C	202	203	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	399	first strand
Strand 2	C	374	377	parallel
Strand 3	C	344	349	parallel
Strand 4	C	421	425	parallel
Strand 5	C	455	460	parallel
Strand 6	C	482	485	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	537	540	first strand
Strand 2	C	594	597	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	776	780	first strand
Strand 2	C	754	758	parallel
Strand 3	C	719	724	parallel
Strand 4	C	799	804	parallel
Strand 5	C	878	882	parallel
Strand 6	C	914	916	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	977	981	first strand
Strand 2	C	1048	1052	anti-parallel
Strand 3	C	1010	1017	anti-parallel
Strand 4	C	1031	1035	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	140	first strand
Strand 2	D	202	203	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	398	399	first strand
Strand 2	D	374	377	parallel
Strand 3	D	344	349	parallel
Strand 4	D	421	425	parallel
Strand 5	D	455	460	parallel
Strand 6	D	482	485	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	537	540	first strand
Strand 2	D	594	597	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	776	780	first strand
Strand 2	D	754	758	parallel
Strand 3	D	719	724	parallel
Strand 4	D	799	804	parallel
Strand 5	D	878	882	parallel
Strand 6	D	914	916	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	977	981	first strand
Strand 2	D	1048	1052	anti-parallel
Strand 3	D	1010	1017	anti-parallel
Strand 4	D	1031	1035	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V38

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V38